Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS13100 and BBR_RS13105 are separated by 162 nucleotidesBBR_RS13105 and BBR_RS13110 are separated by 93 nucleotidesBBR_RS13110 and BBR_RS13115 are separated by 126 nucleotidesBBR_RS13115 and BBR_RS13120 are separated by 186 nucleotides BBR_RS13100: BBR_RS13100 - sugar ABC transporter substrate-binding protein, at 713,528 to 714,874 _RS13100 BBR_RS13105: BBR_RS13105 - sugar ABC transporter substrate-binding protein, at 715,037 to 716,458 _RS13105 BBR_RS13110: BBR_RS13110 - type III pantothenate kinase, at 716,552 to 717,322 _RS13110 BBR_RS13115: BBR_RS13115 - Solute-binding protein of ABC transporter system for peptide, at 717,449 to 719,083 _RS13115 BBR_RS13120: BBR_RS13120 - ABC transporter permease, at 719,270 to 720,247 _RS13120
Group Condition BBR_RS13100 BBR_RS13105 BBR_RS13110 BBR_RS13115 BBR_RS13120
chicken coculture chicken 2; day 7; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron -1.1 N.D. -1.8 N.D. N.D.
chicken coculture chicken 4; day 4; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron -1.9 N.D. -0.1 N.D. N.D.
chicken coculture chicken 4; day 3; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron -1.0 N.D. -0.3 N.D. N.D.
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse14; day3 -1.3 N.D. -0.0 N.D. N.D.
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse15; day3 -1.0 N.D. -0.2 N.D. N.D.
mouse preculture cage3; mouse1; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs -0.2 N.D. -1.0 N.D. N.D.
supernatant CDM1Gut with 50% spent media from Clostridium perfringens WAL-14572 +0.1 N.D. -1.1 N.D. N.D.
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse12; day4 -1.1 N.D. +0.6 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day1 -1.4 N.D. +0.9 N.D. N.D.
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse12; day2 -0.9 N.D. +0.5 N.D. N.D.
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse13; day2 -0.7 N.D. +0.6 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day6 +0.6 N.D. -0.5 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day2 +0.4 N.D. +0.8 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day5 +0.6 N.D. +0.6 N.D. N.D.
mouse diet=StandardDiet2; sample=FecalPellet; mouse17; day3 +0.3 N.D. +0.9 N.D. N.D.
supernatant CDM1Gut with 50% spent media from Escherichia fergusonnii TT2 +0.4 N.D. +0.8 N.D. N.D.
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day2 +0.5 N.D. +0.7 N.D. N.D.
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day3 +0.3 N.D. +1.0 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day4 +0.5 N.D. +0.8 N.D. N.D.
nutrient dropout CDM1 without Glutamate -0.0 N.D. +1.3 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day5 +0.5 N.D. +0.9 N.D. N.D.
nutrient dropout CDM1 without Glutamate +0.1 N.D. +1.2 N.D. N.D.
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day4 +0.7 N.D. +0.7 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day3 +0.5 N.D. +1.0 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day3 +0.6 N.D. +0.9 N.D. N.D.
mouse mouse 5; day 1; diet=StandardDiet; sample=FecalPellet +0.6 N.D. +1.1 N.D. N.D.
nutrient dropout CDM1 without Methionine +0.2 N.D. +1.5 N.D. N.D.
nutrient dropout CDM1 without Glycine +0.4 N.D. +1.3 N.D. N.D.
nutrient dropout CDM1 without Methionine -0.1 N.D. +1.9 N.D. N.D.
mouse mouse 1; day 2; diet=StandardDiet; sample=FecalPellet +0.6 N.D. +1.3 N.D. N.D.
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