Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS13090 and BBR_RS13095 are separated by 179 nucleotidesBBR_RS13095 and BBR_RS13100 are separated by 255 nucleotidesBBR_RS13100 and BBR_RS13105 are separated by 162 nucleotidesBBR_RS13105 and BBR_RS13110 are separated by 93 nucleotides BBR_RS13090: BBR_RS13090 - Permease of ABC transporter system for sugars, at 710,019 to 711,017 _RS13090 BBR_RS13095: BBR_RS13095 - beta-galactosidase, at 711,197 to 713,272 _RS13095 BBR_RS13100: BBR_RS13100 - sugar ABC transporter substrate-binding protein, at 713,528 to 714,874 _RS13100 BBR_RS13105: BBR_RS13105 - sugar ABC transporter substrate-binding protein, at 715,037 to 716,458 _RS13105 BBR_RS13110: BBR_RS13110 - type III pantothenate kinase, at 716,552 to 717,322 _RS13110
Group Condition BBR_RS13090 BBR_RS13095 BBR_RS13100 BBR_RS13105 BBR_RS13110
carbon source reconstituted MRS with Lacto-N-tetraose 7.1 mM N.D. -6.5 -0.1 N.D. -0.1
carbon source reconstituted MRS with Lacto-N-tetraose 7.1 mM N.D. -4.2 -0.0 N.D. +0.0
chicken coculture chicken 2; day 7; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron N.D. -0.9 -1.1 N.D. -1.8
chicken coculture chicken 4; day 4; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron N.D. -0.5 -1.9 N.D. -0.1
chicken coculture chicken 4; day 3; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron N.D. -0.5 -1.0 N.D. -0.3
carbon source reconstituted MRS with Lacto-N-fucopentaose II 5.9 mM N.D. -1.6 -0.0 N.D. +0.1
mouse preculture cage3; mouse1; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs N.D. -0.2 -0.2 N.D. -1.0
carbon source reconstituted MRS with Sialyllacto-N-tetraose a 5.0 mM N.D. -1.4 +0.0 N.D. +0.2
carbon source reconstituted MRS with Sialyllacto-N-tetraose a 5.0 mM N.D. -1.5 +0.0 N.D. +0.4
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse15; day3 N.D. +0.4 -1.0 N.D. -0.2
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day1 N.D. -0.1 -1.4 N.D. +0.9
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse12; day2 N.D. +0.1 -0.9 N.D. +0.5
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse12; day4 N.D. +0.3 -1.1 N.D. +0.6
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse13; day2 N.D. +0.4 -0.7 N.D. +0.6
nutrient dropout CDM1 without Guanine N.D. +0.4 -0.3 N.D. +0.7
supernatant CDM1Gut with 50% spent media from Escherichia fergusonnii TT2 N.D. -0.2 +0.4 N.D. +0.8
nutrient dropout CDM1 without Cysteine N.D. +0.5 -0.0 N.D. +0.9
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day3 N.D. +0.1 +0.3 N.D. +1.0
nutrient dropout CDM1 without Isoleucine N.D. +0.5 +0.3 N.D. +0.6
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day4 N.D. +0.2 +0.5 N.D. +0.8
nutrient dropout CDM1 without Glutamate N.D. +0.2 +0.1 N.D. +1.2
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day4 N.D. +0.2 +0.7 N.D. +0.7
nutrient dropout CDM1 without Glutamate N.D. +0.2 -0.0 N.D. +1.3
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day3 N.D. +0.1 +0.5 N.D. +1.0
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day3 N.D. +0.2 +0.6 N.D. +0.9
nutrient dropout CDM1 without Methionine N.D. +0.2 +0.2 N.D. +1.5
mouse mouse 5; day 1; diet=StandardDiet; sample=FecalPellet N.D. +0.2 +0.6 N.D. +1.1
mouse mouse 1; day 2; diet=StandardDiet; sample=FecalPellet N.D. +0.1 +0.6 N.D. +1.3
nutrient dropout CDM1 without Glycine N.D. +0.3 +0.4 N.D. +1.3
nutrient dropout CDM1 without Methionine N.D. +0.4 -0.1 N.D. +1.9
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