Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS13020 and BBR_RS13025 are separated by 351 nucleotidesBBR_RS13025 and BBR_RS13030 are separated by 2 nucleotidesBBR_RS13030 and BBR_RS13035 are separated by 3 nucleotidesBBR_RS13035 and BBR_RS13040 are separated by 78 nucleotides BBR_RS13020: BBR_RS13020 - DNA polymerase III subunit epsilon, at 693,711 to 695,165 _RS13020 BBR_RS13025: BBR_RS13025 - peptide chain release factor 2, at 695,517 to 696,641 _RS13025 BBR_RS13030: BBR_RS13030 - cell division ATP-binding protein FtsE, at 696,644 to 697,840 _RS13030 BBR_RS13035: BBR_RS13035 - ABC transporter permease, at 697,844 to 698,767 _RS13035 BBR_RS13040: BBR_RS13040 - CHAP domain-containing protein, at 698,846 to 700,192 _RS13040
Group Condition BBR_RS13020 BBR_RS13025 BBR_RS13030 BBR_RS13035 BBR_RS13040
chicken chicken 3; day 3; diet=StandardDiet; sample=FecalPellet -0.1 N.D. -8.0 -7.8 -8.2
chicken chicken 1; day 2; diet=StandardDiet; sample=FecalPellet -0.0 N.D. -7.4 -7.9 -8.3
chicken chicken 9; day 2; diet=StandardDiet; sample=FecalPellet -0.1 N.D. -8.0 -7.8 -7.5
chicken chicken 10; day 4; diet=StandardDiet; sample=FecalPellet +0.1 N.D. -7.8 -7.6 -8.0
chicken chicken 3; day 2; diet=StandardDiet; sample=FecalPellet -0.0 N.D. -7.2 -7.7 -8.1
chicken chicken 5; day 6; diet=StandardDiet; sample=FecalPellet -0.0 N.D. -7.5 -7.3 -7.7
chicken chicken 10; day 5; diet=StandardDiet; sample=FecalPellet +0.2 N.D. -7.5 -7.4 -7.8
chicken chicken 2; day 5; diet=StandardDiet; sample=FecalPellet +0.1 N.D. -7.3 -7.2 -7.5
chicken coculture chicken 4; day 4; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron -0.1 N.D. -6.9 -6.6 -7.2
nutrient dropout control CDM1 +0.1 N.D. -7.0 -6.3 -7.1
nutrient dropout CDM1 without Biotin +0.2 N.D. -6.6 -6.5 -7.3
chicken coculture chicken 4; day 3; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron -0.1 N.D. -6.1 -6.6 -7.3
nutrient dropout CDM1 without Lysine +0.2 N.D. -7.0 -6.3 -7.0
nutrient dropout control CDM1 +0.2 N.D. -6.9 -6.2 -7.0
chicken chicken 5; day 7; diet=StandardDiet; sample=FecalPellet +0.1 N.D. -7.1 -6.9 -6.2
nutrient dropout CDM1 without Nicotinate +0.1 N.D. -7.0 -6.3 -6.4
nutrient dropout CDM1 without Leucine +0.1 N.D. -6.4 -6.3 -7.1
nutrient dropout CDM1 without Guanine +0.3 N.D. -6.9 -6.2 -7.0
nutrient dropout CDM1 without Proline +0.0 N.D. -6.8 -6.1 -6.9
nutrient dropout control CDM1 +0.2 N.D. -6.4 -6.3 -7.1
chicken chicken 21; day 7; diet=StandardDiet; sample=Cecum -0.1 N.D. -6.3 -6.2 -6.5
nutrient dropout CDM1 without Pyridoxamine -0.0 N.D. -5.5 -6.4 -7.1
nutrient dropout CDM1 without Asparagine -0.0 N.D. -5.8 -6.1 -6.9
nutrient dropout CDM1 without Histidine -0.0 N.D. -5.6 -6.2 -7.0
nutrient dropout CDM1 with Glycine Leucine Cysteine Methionine Glutamate as the only aminos +0.2 N.D. -5.8 -6.2 -7.0
nutrient dropout CDM1 without Adenine +0.2 N.D. -6.6 -5.9 -6.6
nutrient dropout CDM1 without Pantothenate +0.2 N.D. -5.6 -6.2 -7.0
nutrient dropout CDM1 without Arginine +0.1 N.D. -5.8 -6.1 -6.9
nutrient dropout CDM1 without LipoicAcid +0.3 N.D. -6.7 -6.0 -6.1
nutrient dropout CDM1 without Glutamine +0.3 N.D. -5.3 -6.2 -7.0
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