Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS12980 and BBR_RS12985 are separated by 171 nucleotidesBBR_RS12985 and BBR_RS12990 are separated by 87 nucleotidesBBR_RS12990 and BBR_RS12995 are separated by 105 nucleotidesBBR_RS12995 and BBR_RS13000 are separated by 79 nucleotides BBR_RS12980: BBR_RS12980 - ATP-dependent DNA helicase UvrD/REP family, at 679,178 to 683,113 _RS12980 BBR_RS12985: BBR_RS12985 - MFS transporter, at 683,285 to 684,604 _RS12985 BBR_RS12990: BBR_RS12990 - 4-hydroxy-tetrahydrodipicolinate reductase, at 684,692 to 685,447 _RS12990 BBR_RS12995: BBR_RS12995 - 4-hydroxy-tetrahydrodipicolinate synthase, at 685,553 to 686,458 _RS12995 BBR_RS13000: BBR_RS13000 - RNase J family beta-CASP ribonuclease, at 686,538 to 688,394 _RS13000
Group Condition BBR_RS12980 BBR_RS12985 BBR_RS12990 BBR_RS12995 BBR_RS13000
chicken coculture chicken 4; day 3; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron -3.9 -3.2 -3.4 -5.2 N.D.
chicken coculture chicken 4; day 4; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron -4.0 -2.2 -4.3 -4.4 N.D.
chicken chicken 2; day 5; diet=StandardDiet; sample=FecalPellet -4.4 -2.6 -2.3 -5.4 N.D.
chicken chicken 1; day 2; diet=StandardDiet; sample=FecalPellet -5.0 -0.9 -2.6 -5.4 N.D.
chicken chicken 2; day 6; diet=StandardDiet; sample=FecalPellet -3.2 -2.6 -3.8 -4.2 N.D.
chicken chicken 5; day 6; diet=StandardDiet; sample=FecalPellet -4.6 -0.9 -1.9 -5.6 N.D.
chicken chicken 5; day 7; diet=StandardDiet; sample=FecalPellet -4.1 -1.2 -2.2 -5.1 N.D.
chicken chicken 9; day 2; diet=StandardDiet; sample=FecalPellet -4.7 -0.7 -1.4 -5.4 N.D.
chicken chicken 3; day 3; diet=StandardDiet; sample=FecalPellet -4.9 -0.7 -1.0 -5.3 N.D.
chicken coculture chicken 2; day 7; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron -3.3 -2.1 -2.8 -3.6 N.D.
chicken chicken 10; day 5; diet=StandardDiet; sample=FecalPellet -4.7 -0.8 -0.6 -5.4 N.D.
chicken chicken 10; day 4; diet=StandardDiet; sample=FecalPellet -4.7 -0.6 -0.4 -5.4 N.D.
chicken chicken 3; day 2; diet=StandardDiet; sample=FecalPellet -4.8 -0.1 +0.3 -5.7 N.D.
nutrient dropout CDM1 without Lysine -2.7 +1.3 -2.6 -6.3 N.D.
nutrient dropout CDM1 without Lysine -1.9 +1.1 -2.4 -7.0 N.D.
nutrient dropout CDM1 with Glycine Leucine Cysteine Methionine Glutamate as the only aminos -2.7 +0.5 -1.2 -6.4 N.D.
nutrient dropout CDM1 with Glycine Leucine Cysteine Methionine Glutamate as the only aminos -2.9 +0.5 -1.2 -6.0 N.D.
nutrient dropout CDM1 without Phenylalanine -2.9 +0.4 -1.1 -5.3 N.D.
nutrient dropout CDM1 without Serine -2.3 +0.9 -0.5 -6.8 N.D.
nutrient dropout CDM1 without FolicAcid -2.4 +1.1 -0.9 -5.7 N.D.
chicken chicken 21; day 7; diet=StandardDiet; sample=Small_intestine -3.3 -1.7 +1.4 -4.3 N.D.
nutrient dropout CDM1 without Histidine -2.5 +1.1 -0.7 -5.7 N.D.
nutrient dropout CDM1 without Nicotinate -2.0 +0.9 -1.3 -5.3 N.D.
nutrient dropout control CDM1 -2.1 +1.1 -0.4 -6.2 N.D.
nutrient dropout CDM1 without Uracil -2.8 +1.2 -1.1 -4.8 N.D.
nutrient dropout CDM1 without LipoicAcid -2.2 +1.1 -0.7 -5.7 N.D.
chicken chicken 21; day 7; diet=StandardDiet; sample=Cecum -3.3 -1.2 +1.3 -4.2 N.D.
nutrient dropout CDM1 without FolicAcid -0.9 +1.2 -0.8 -6.8 N.D.
nutrient dropout CDM1 without FolicAcid -0.9 +1.2 -1.0 -6.5 N.D.
nutrient dropout CDM1 without Valine -2.6 +1.3 -0.9 -4.8 N.D.
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