Fitness for 5 genes in Bifidobacterium breve UCC2003

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BBR_RS12855	BBR_RS12860	BBR_RS12865	BBR_RS12870	BBR_RS12875
nutrient dropout	CDM1 without Leucine	-2.1	-0.7	+0.2	-3.4	-0.0
nutrient dropout	CDM1 without Leucine	-1.2	-0.2	+0.2	-2.6	-0.1
stress	Recovery broth with Warfarin 1.0 mM	+0.2	-3.8	+0.0	+0.1	-0.1
nutrient dropout	CDM1 without Uracil	-3.3	-1.2	+0.3	+0.8	+0.1
nutrient dropout	CDM1 without Phenylalanine	-2.9	-1.7	+0.5	+1.1	-0.1
nutrient dropout	CDM1 without Isoleucine	-2.9	-1.0	+0.2	+0.8	-0.0
nutrient dropout	CDM1 without Histidine	-3.5	-0.7	+0.2	+0.9	+0.1
stress	Recovery broth with Cetomacrogol 1000 0.5 mM	+0.3	-3.7	+0.2	+0.3	-0.0
nutrient dropout	CDM1 without Lysine	-2.9	-0.6	+0.1	+0.8	-0.3
nutrient dropout	CDM1 without Asparagine	-2.7	-1.3	+0.3	+0.9	-0.1
nutrient dropout	CDM1 without Nicotinate	-3.1	-0.6	+0.2	+0.7	+0.1
nutrient dropout	CDM1 without Adenine	-3.2	-1.1	+0.5	+1.0	+0.1
chicken	chicken 21; day 7; diet=StandardDiet; sample=Cecum	-2.3	-0.6	-0.4	+1.0	-0.3
nutrient dropout	CDM1 without Valine	-3.1	-0.6	+0.1	+1.2	-0.1
nutrient dropout	CDM1 without Biotin	-2.6	-0.6	+0.3	+0.8	-0.1
nutrient dropout	CDM1 without Guanine	-2.7	-0.5	+0.2	+0.8	-0.0
nutrient dropout	CDM1 without Arginine	-2.8	-0.5	+0.3	+0.9	-0.1
nutrient dropout	CDM1 with Glycine Leucine Cysteine Methionine Glutamate as the only aminos	-2.6	-1.8	+0.0	+2.4	-0.3
nutrient dropout	CDM1 without Pyridoxamine	-2.4	-0.8	+0.3	+0.9	-0.1
nutrient dropout	CDM1 without LipoicAcid	-2.7	-0.5	+0.4	+0.7	+0.0
nutrient dropout	CDM1 without Pantothenate	-2.6	-0.3	+0.3	+0.8	-0.1
nutrient dropout	CDM1 without Threonine	-2.7	-0.6	+0.4	+0.9	+0.1
nutrient dropout control	CDM1	-2.2	-0.5	+0.3	+0.8	-0.2
nutrient dropout	CDM1 without Glycine	-2.6	-1.5	+0.6	+1.2	+0.5
nutrient dropout	CDM1 without Alanine	-2.4	-0.5	+0.3	+0.9	+0.0
nutrient dropout control	CDM1	-2.2	-0.5	+0.3	+0.9	+0.2
nutrient dropout	CDM1 without Serine	-2.1	-0.4	+0.3	+1.2	-0.1
nutrient dropout	CDM1 without Tryptophan	-2.4	-0.2	+0.2	+1.4	-0.1
nutrient dropout	CDM1 with Glycine Leucine Cysteine Methionine Glutamate as the only aminos	-1.6	-0.8	+0.1	+1.9	-0.2
chicken coculture	chicken 4; day 4; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron	-1.3	+0.8	-0.6	+1.3	+0.1