Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS12815 and BBR_RS12820 are separated by 301 nucleotidesBBR_RS12820 and BBR_RS12825 are separated by 197 nucleotidesBBR_RS12825 and BBR_RS12830 are separated by 345 nucleotidesBBR_RS12830 and BBR_RS12835 are separated by 172 nucleotides BBR_RS12815: BBR_RS12815 - hypothetical protein, at 624,485 to 624,919 _RS12815 BBR_RS12820: BBR_RS12820 - hypothetical protein, at 625,221 to 626,657 _RS12820 BBR_RS12825: BBR_RS12825 - hypothetical protein, at 626,855 to 628,222 _RS12825 BBR_RS12830: BBR_RS12830 - G5 domain-containing protein, at 628,568 to 629,551 _RS12830 BBR_RS12835: BBR_RS12835 - thioredoxin, at 629,724 to 630,095 _RS12835
Group Condition BBR_RS12815 BBR_RS12820 BBR_RS12825 BBR_RS12830 BBR_RS12835
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day4 -0.2 -6.1 -0.4 -5.9 -2.1
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day5 -0.8 -5.1 -0.8 -4.8 -2.6
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day5 -2.5 -5.7 -0.6 -4.0 -1.3
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day5 -1.0 -5.8 -0.8 -3.6 -2.6
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day3 -2.2 -5.6 -0.6 -2.9 -1.3
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day6 -0.9 -5.2 -0.8 -4.0 -1.8
chicken chicken 2; day 5; diet=StandardDiet; sample=FecalPellet +0.6 -4.9 -0.6 -5.4 -2.3
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day6 -1.9 -5.3 -0.9 -3.9 -0.3
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day4 -0.9 -6.6 -0.2 -3.1 -1.1
chicken coculture chicken 4; day 3; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron -0.1 -4.6 -1.8 -2.5 -2.9
chicken coculture chicken 4; day 4; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron +0.0 -4.2 -0.9 -3.4 -3.3
mouse diet=StandardDiet2; sample=FecalPellet; mouse18; day4 -1.4 -6.7 -0.9 -1.2 -1.4
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day4 -0.5 -6.3 -0.7 -3.0 -1.0
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day3 -1.0 -6.0 -0.8 -2.0 -1.2
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day4 -0.3 -6.3 -0.3 -2.6 -1.3
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6 -1.0 -4.7 -0.5 -2.6 -2.0
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day6 -1.2 -4.5 -0.6 -4.3 -0.2
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day4 -0.3 -5.8 -0.6 -3.1 -0.9
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day5 -0.6 -4.7 -0.9 -3.5 -0.6
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day4 -0.7 -5.0 -0.3 -3.9 -0.4
chicken coculture chicken 2; day 7; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron -0.6 -3.8 -1.4 -4.0 -0.3
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day4 -0.4 -6.2 -0.9 -2.3 -0.3
mouse coculture cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -0.1 -6.1 -0.3 -3.0 -0.4
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day4 -0.4 -5.9 -0.6 -2.5 -0.4
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day4 -0.7 -4.6 -0.4 -2.7 -1.5
chicken chicken 5; day 7; diet=StandardDiet; sample=FecalPellet -0.2 -4.7 -1.0 -3.9 -0.2
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day5 -1.3 -4.8 -0.4 -2.8 -0.6
mouse coculture cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -0.1 -5.7 -0.4 -2.9 -0.5
chicken chicken 2; day 6; diet=StandardDiet; sample=FecalPellet +0.7 -3.5 -0.5 -3.9 -2.2
chicken chicken 5; day 6; diet=StandardDiet; sample=FecalPellet +0.1 -5.0 -1.2 -3.5 +0.1
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