Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS12440 and BBR_RS20695 are separated by 42 nucleotidesBBR_RS20695 and BBR_RS12445 are separated by 433 nucleotidesBBR_RS12445 and BBR_RS12450 are separated by 168 nucleotidesBBR_RS12450 and BBR_RS12455 are separated by 27 nucleotides BBR_RS12440: BBR_RS12440 - Permease of ABC transporter system, at 539,673 to 541,463 _RS12440 BBR_RS20695: BBR_RS20695 - hypothetical protein, at 541,506 to 541,820 _RS20695 BBR_RS12445: BBR_RS12445 - 50S ribosomal protein L19, at 542,254 to 542,619 _RS12445 BBR_RS12450: BBR_RS12450 - signal peptidase I, at 542,788 to 543,711 _RS12450 BBR_RS12455: BBR_RS12455 - ribonuclease HII, at 543,739 to 544,596 _RS12455
Group Condition BBR_RS12440 BBR_RS20695 BBR_RS12445 BBR_RS12450 BBR_RS12455
stress Recovery broth with Gramicidin 3e-04 mM -6.1 -5.6 N.D. +0.0 -0.2
stress Recovery broth with Gramicidin 0.001 mM -4.8 -4.2 N.D. +0.3 -0.2
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day3 +0.2 +0.2 N.D. -7.0 +0.3
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day4 +0.2 +0.3 N.D. -6.7 +0.4
chicken coculture chicken 4; day 4; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron +0.3 -1.9 N.D. -4.1 +0.1
chicken coculture chicken 4; day 3; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron +0.1 -0.7 N.D. -4.7 -0.1
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day5 +0.1 +0.1 N.D. -5.9 +0.5
carbon source reconstituted MRS with Difucosyllactose 7.9 mM +0.4 -3.0 N.D. -2.6 +0.1
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6 +0.1 -0.4 N.D. -5.0 +0.3
mouse diet=StandardDiet2; sample=FecalPellet; mouse18; day4 -0.0 -0.1 N.D. -4.8 +0.1
chicken chicken 21; day 7; diet=StandardDiet; sample=Cecum -0.0 -0.5 N.D. -3.7 -0.4
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day2 +0.3 -0.5 N.D. -4.8 +0.4
stress Recovery broth with Penicillin G 2e-04 mM +0.0 -0.7 N.D. -3.3 -0.0
nutrient dropout CDM1 without Adenine -1.1 -1.3 N.D. -1.5 -0.1
stress Recovery broth with Amoxicillin 0.003 mM -0.0 -0.6 N.D. -3.4 +0.0
mouse preculture cage3; mouse1; day4; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs +0.1 -0.9 N.D. -3.1 +0.0
stress Recovery broth with Ticarcillin 4e-04 mM -0.1 -0.3 N.D. -3.5 +0.2
chicken chicken 2; day 6; diet=StandardDiet; sample=FecalPellet -0.3 +0.3 N.D. -3.2 -0.4
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day4 -0.1 -0.7 N.D. -3.2 +0.4
mouse diet=StandardDiet; sample=FecalPellet; mouse4; day2 +0.1 +0.6 N.D. -4.4 +0.3
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day3 +0.2 +0.7 N.D. -4.5 +0.4
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day5 +0.1 +0.7 N.D. -4.6 +0.6
chicken chicken 1; day 2; diet=StandardDiet; sample=FecalPellet -0.4 +0.5 N.D. -3.0 -0.1
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day1 +0.5 -0.1 N.D. -3.3 -0.2
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day2 +0.1 +0.5 N.D. -3.6 +0.1
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day4 +0.1 +0.7 N.D. -3.9 +0.4
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day5 +0.1 +0.1 N.D. -3.2 +0.5
chicken chicken 5; day 7; diet=StandardDiet; sample=FecalPellet -0.1 +0.8 N.D. -3.0 +0.2
mouse diet=StandardDiet; sample=FecalPellet; mouse4; day5 +0.1 +0.5 N.D. -3.0 +0.6
mouse preculture cage3; mouse2; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs +0.0 +1.6 N.D. -2.9 +0.1
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