Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS12420 and BBR_RS12425 are separated by 91 nucleotidesBBR_RS12425 and BBR_RS12430 are separated by 358 nucleotidesBBR_RS12430 and BBR_RS12435 are separated by 603 nucleotidesBBR_RS12435 and BBR_RS12440 are separated by 121 nucleotides BBR_RS12420: BBR_RS12420 - tRNA-Leu, at 535,223 to 535,303 _RS12420 BBR_RS12425: BBR_RS12425 - tRNA-Thr, at 535,395 to 535,470 _RS12425 BBR_RS12430: BBR_RS12430 - glucose-6-phosphate isomerase, at 535,829 to 537,529 _RS12430 BBR_RS12435: BBR_RS12435 - ABC transporter ATP-binding protein, at 538,133 to 539,551 _RS12435 BBR_RS12440: BBR_RS12440 - Permease of ABC transporter system, at 539,673 to 541,463 _RS12440
Group Condition BBR_RS12420 BBR_RS12425 BBR_RS12430 BBR_RS12435 BBR_RS12440
stress Recovery broth with Gramicidin 3e-04 mM N.D. N.D. N.D. -3.9 -6.1
stress Recovery broth with Gramicidin 0.001 mM N.D. N.D. N.D. -3.2 -4.8
stress Recovery broth with Trimethoprim 0.01 mM N.D. N.D. N.D. -0.8 -0.6
nutrient dropout CDM1 with Glycine Leucine Cysteine Methionine Glutamate as the only aminos N.D. N.D. N.D. -0.5 -0.9
nutrient dropout CDM1 without Adenine N.D. N.D. N.D. -0.3 -1.1
mouse coculture cage1; mouse3; day2; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 N.D. N.D. N.D. -0.6 -0.5
stress Recovery broth with Pyrimethamine 0.004 mM N.D. N.D. N.D. -0.6 -0.4
mouse coculture cage1; mouse3; day3; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 N.D. N.D. N.D. -0.3 -0.5
nutrient dropout CDM1 without Uracil N.D. N.D. N.D. +0.0 -0.9
nutrient dropout CDM1 without Riboflavin N.D. N.D. N.D. -0.3 -0.5
stress Recovery broth with Streptomycin 0.3 mM N.D. N.D. N.D. -0.5 -0.3
nutrient dropout CDM1 without Lysine N.D. N.D. N.D. +0.1 -0.7
nutrient dropout CDM1 without Adenine N.D. N.D. N.D. +0.4 -0.4
nutrient dropout control CDM1 N.D. N.D. N.D. +0.5 -0.4
nutrient dropout CDM1 without LipoicAcid N.D. N.D. N.D. +0.5 -0.3
nutrient dropout CDM1 without Cytosine N.D. N.D. N.D. +0.5 -0.3
nutrient dropout CDM1 without Alanine N.D. N.D. N.D. +0.5 -0.3
nutrient dropout CDM1 without FolicAcid N.D. N.D. N.D. +0.5 -0.3
nutrient dropout CDM1 without Guanine N.D. N.D. N.D. +0.5 -0.3
nutrient dropout CDM1 without Arginine N.D. N.D. N.D. +0.6 -0.3
nutrient dropout CDM1 without Phenylalanine N.D. N.D. N.D. +0.6 -0.4
nutrient dropout CDM1 without Phenylalanine N.D. N.D. N.D. +0.7 -0.3
nutrient dropout CDM1 without LipoicAcid N.D. N.D. N.D. +0.7 -0.1
nutrient dropout CDM1 without Guanine N.D. N.D. N.D. +0.7 +0.1
nutrient dropout CDM1 without Threonine N.D. N.D. N.D. +0.7 +0.1
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day5 N.D. N.D. N.D. +0.5 +0.3
nutrient dropout CDM1 without Alanine N.D. N.D. N.D. +0.8 +0.1
stress Recovery broth with Bacitracin 0.01 mM N.D. N.D. N.D. +0.5 +0.4
nutrient dropout CDM1 without Pantothenate N.D. N.D. N.D. +0.8 +0.3
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse13; day2 N.D. N.D. N.D. +0.8 +0.4
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