Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS12300 and BBR_RS12305 are separated by 219 nucleotidesBBR_RS12305 and BBR_RS12310 are separated by 251 nucleotidesBBR_RS12310 and BBR_RS20690 are separated by 38 nucleotidesBBR_RS20690 and BBR_RS12315 are separated by 115 nucleotides BBR_RS12300: BBR_RS12300 - 30S ribosomal protein S16, at 509,965 to 510,438 _RS12300 BBR_RS12305: BBR_RS12305 - endonuclease/exonuclease/phosphatase family protein, at 510,658 to 511,989 _RS12305 BBR_RS12310: BBR_RS12310 - signal recognition particle protein, at 512,241 to 513,896 _RS12310 BBR_RS20690: BBR_RS20690 - hypothetical protein, at 513,935 to 514,135 _RS20690 BBR_RS12315: BBR_RS12315 - cation transporter, at 514,251 to 515,159 _RS12315
Group Condition BBR_RS12300 BBR_RS12305 BBR_RS12310 BBR_RS20690 BBR_RS12315
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day3 -7.6 -2.5 -5.6 -6.9 +0.4
mouse diet=StandardDiet; sample=FecalPellet; mouse4; day5 -3.7 -2.3 -3.1 -4.4 -2.8
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day5 -5.9 -1.9 -2.4 -2.7 -3.1
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day6 -3.0 -2.9 -2.7 -3.9 -3.5
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6 -3.0 -2.3 -2.6 -3.9 -3.3
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day3 -2.0 -1.9 -4.2 -5.4 -1.1
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day5 -2.3 -2.9 -3.5 -2.9 -2.4
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day5 -2.1 -1.9 -3.0 -4.2 -2.9
chicken coculture chicken 4; day 3; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron -6.4 -2.8 -4.4 +0.3 -0.3
chicken chicken 9; day 2; diet=StandardDiet; sample=FecalPellet -3.7 -4.2 -4.7 -0.7 -0.1
chicken chicken 5; day 6; diet=StandardDiet; sample=FecalPellet -5.0 -3.5 -4.2 -0.2 -0.3
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day4 -2.9 -2.3 -3.6 -1.6 -2.5
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day5 -0.9 -2.8 -3.2 -2.0 -3.5
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day6 -2.1 -3.0 -2.8 -0.6 -3.7
mouse diet=StandardDiet2; sample=FecalPellet; mouse17; day4 -3.4 -2.3 -4.9 +0.1 -1.4
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day4 -5.7 -3.7 +0.2 -2.0 -0.3
mouse preculture cage3; mouse1; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs -1.9 -3.3 -5.0 -1.1 -0.2
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse14; day3 -4.2 -0.4 -2.5 -3.7 -0.5
chicken chicken 2; day 6; diet=StandardDiet; sample=FecalPellet -4.5 -3.3 -2.8 -0.1 -0.4
mouse coculture cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -5.4 -2.9 -1.8 -0.1 -0.7
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day4 -3.2 -2.5 -1.1 -2.0 -2.2
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day4 -3.3 -3.5 -2.9 +0.9 -0.6
nutrient dropout CDM1 with Glycine Leucine Cysteine Methionine Glutamate as the only aminos -1.8 +2.0 -2.0 -2.0 -5.4
chicken chicken 1; day 2; diet=StandardDiet; sample=FecalPellet -3.1 -5.0 -1.6 +1.1 -0.3
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day2 -3.7 -3.7 -2.7 +1.2 +0.2
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day3 -0.5 -3.4 -5.7 +1.3 +0.3
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day6 -1.8 -2.3 +1.6 -3.2 -2.1
nutrient dropout CDM1 without Glycine +1.4 +0.8 -2.3 -2.7 -4.3
nutrient dropout CDM1 without Phenylalanine -1.0 +2.6 +0.6 -1.9 -5.0
nutrient dropout CDM1 without Phenylalanine +1.1 +2.4 +1.7 -4.9 -5.0
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BBR_RS12300
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