Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS12180 and BBR_RS12185 are separated by 269 nucleotidesBBR_RS12185 and BBR_RS12190 are separated by 289 nucleotidesBBR_RS12190 and BBR_RS12195 are separated by 164 nucleotidesBBR_RS12195 and BBR_RS12200 overlap by 21 nucleotides BBR_RS12180: BBR_RS12180 - DUF2974 domain-containing protein, at 481,393 to 482,730 _RS12180 BBR_RS12185: BBR_RS12185 - methylated-DNA--[protein]-cysteine S-methyltransferase, at 483,000 to 483,554 _RS12185 BBR_RS12190: BBR_RS12190 - holo-ACP synthase, at 483,844 to 484,293 _RS12190 BBR_RS12195: BBR_RS12195 - alpha-amylase, at 484,458 to 485,000 _RS12195 BBR_RS12200: BBR_RS12200 - hypothetical protein, at 484,980 to 485,678 _RS12200
Group Condition BBR_RS12180 BBR_RS12185 BBR_RS12190 BBR_RS12195 BBR_RS12200
stress Recovery broth with Gramicidin 0.001 mM -2.0 -0.0 N.D. +0.2 -0.0
nutrient dropout control CDM1 +0.8 -0.4 N.D. -0.8 -0.4
nutrient dropout CDM1 without Asparagine +1.0 -0.3 N.D. -0.9 -0.6
nutrient dropout CDM1 without Cytosine +1.1 -0.6 N.D. -0.9 -0.3
nutrient dropout CDM1 without Uracil +0.9 -0.3 N.D. -0.8 -0.6
nutrient dropout CDM1 without Nicotinate +0.8 -0.1 N.D. -0.9 -0.4
nutrient dropout CDM1 without Isoleucine +0.9 -0.3 N.D. -0.8 -0.4
nutrient dropout CDM1 without Adenine +0.9 -0.1 N.D. -0.9 -0.4
nutrient dropout CDM1 without Arginine +0.8 -0.2 N.D. -0.8 -0.3
nutrient dropout control CDM1 +0.7 -0.2 N.D. -0.7 -0.3
nutrient dropout CDM1 without Phenylalanine +0.9 +0.0 N.D. -0.6 -0.8
nutrient dropout control CDM1 +0.8 -0.1 N.D. -0.8 -0.3
nutrient dropout CDM1 without Threonine +0.8 -0.1 N.D. -0.6 -0.4
nutrient dropout CDM1 without Thiamine +0.8 -0.3 N.D. -0.6 -0.2
nutrient dropout control CDM1 +0.8 +0.0 N.D. -0.8 -0.4
nutrient dropout CDM1 without Cyanocobalamin +0.8 -0.2 N.D. -0.7 -0.3
nutrient dropout CDM1 without Valine +0.9 -0.3 N.D. -0.6 -0.3
nutrient dropout CDM1 without Cysteine +1.0 -0.2 N.D. -0.7 -0.4
nutrient dropout CDM1 without Methionine +0.9 -0.2 N.D. -0.6 -0.2
nutrient dropout CDM1 without Aspartate +1.0 -0.2 N.D. -0.7 -0.3
nutrient dropout CDM1 without Alanine +1.0 -0.3 N.D. -0.7 -0.1
nutrient dropout CDM1 without Proline +1.1 -0.4 N.D. -0.7 -0.3
nutrient dropout CDM1 without Pantothenate +1.0 -0.2 N.D. -0.6 -0.2
nutrient dropout CDM1 without FolicAcid +1.1 -0.3 N.D. -0.7 -0.2
nutrient dropout CDM1 without Glutamine +0.9 -0.1 N.D. -0.7 -0.2
nutrient dropout CDM1 without Leucine +1.2 -0.1 N.D. -0.8 -0.3
nutrient dropout CDM1 without Guanine +1.0 -0.1 N.D. -0.6 -0.2
nutrient dropout CDM1 without Serine +1.1 -0.2 N.D. -0.7 -0.2
nutrient dropout CDM1 without LipoicAcid +1.1 -0.2 N.D. -0.6 -0.1
stress Recovery broth with acetate 350 mM +2.6 -0.1 N.D. +0.2 +0.2
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