Fitness for 5 genes in Bifidobacterium breve UCC2003

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BBR_RS12120	BBR_RS12125	BBR_RS12130	BBR_RS12135	BBR_RS12140
chicken	chicken 2; day 6; diet=StandardDiet; sample=FecalPellet	-1.1	-0.2	-0.1	+0.0	-2.8
mouse	diet=StandardDiet2; sample=FecalPellet; mouse16; day3	-2.6	-0.6	-0.2	+0.2	-0.1
mouse	diet=StandardDiet2; sample=FecalPellet; mouse16; day4	-2.6	+0.2	+0.1	+0.2	-1.2
mouse preculture	cage3; mouse1; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs	+0.0	-1.9	-0.0	-0.1	-0.8
mouse	diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day6	+0.2	+0.1	+0.1	+0.0	-3.0
chicken	chicken 21; day 7; diet=StandardDiet; sample=Cecum	-2.3	+0.2	+0.1	-0.2	-0.3
mouse	diet=StandardDiet; sample=FecalPellet; mouse3; day4	-0.1	-0.2	-0.2	-0.1	-1.8
mouse	diet=HighFatHighSugar; sample=FecalPellet; mouse14; day3	-0.1	-0.8	+0.2	+0.3	-2.0
chicken	chicken 2; day 5; diet=StandardDiet; sample=FecalPellet	-0.8	-0.1	+0.2	+0.0	-1.7
mouse	diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day5	+0.2	-1.0	-0.1	+0.0	-1.4
mouse	diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6	+0.2	-0.4	+0.1	+0.1	-2.2
mouse	diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day6	+0.1	-0.6	+0.0	+0.2	-1.7
carbon source	reconstituted MRS with Amylopectin from maize 10 mg/ml	+0.1	-0.1	+0.1	-0.2	-1.8
mouse coculture	cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482	+0.2	-0.6	+0.1	-0.1	-1.4
mouse coculture	cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482	+0.2	-0.6	+0.1	+0.1	-1.5
mouse	diet=HighFatHighSugar; sample=FecalPellet; mouse13; day3	-0.7	-0.3	+0.2	+0.4	-1.2
carbon source	reconstituted MRS with Sucrose 29 mM	+0.2	-0.2	+0.2	-0.1	-1.8
carbon source	reconstituted MRS with Amylopectin from maize 10 mg/ml	-0.0	+0.2	+0.2	-0.3	-1.6
chicken	chicken 21; day 7; diet=StandardDiet; sample=Small_intestine	-2.1	+0.4	+0.1	+0.2	-0.1
mouse	diet=StandardDiet; sample=FecalPellet; mouse1; day2	-1.0	+0.3	+0.1	+0.1	-0.9
mouse	diet=HighFatHighSugar; sample=FecalPellet; mouse13; day2	+0.2	+0.3	+0.2	-0.2	-1.8
mouse	diet=StandardDiet2; sample=FecalPellet; mouse16; day2	-1.8	+0.5	+0.1	+0.1	-0.0
mouse preculture	cage3; mouse3; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs	+0.2	+0.5	-0.2	-0.1	-1.6
nutrient dropout	CDM1 without Phenylalanine	+0.6	-0.7	-0.3	-0.4	-0.3
mouse	diet=StandardDiet; sample=FecalPellet; mouse1; day3	-0.7	+0.2	+0.4	+0.2	-1.1
carbon source	reconstituted MRS with Inulin 0.8 mM	+0.6	+0.1	+0.1	-0.0	-1.5
mouse	diet=HighFatHighSugar; sample=FecalPellet; mouse11; day3	-0.8	+0.3	+0.5	+0.4	-1.1
chicken coculture	chicken 4; day 4; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron	-1.5	-0.0	-0.4	-0.2	+1.5
nutrient dropout	CDM1 without Lysine	-1.0	+0.7	+0.3	-0.0	+0.2
nutrient dropout	CDM1 without Glutamate	-0.2	+1.7	+0.6	+0.1	+0.1