Fitness for 5 genes in Bifidobacterium breve UCC2003

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BBR_RS12115	BBR_RS12120	BBR_RS12125	BBR_RS12130	BBR_RS12135
mouse preculture	cage3; mouse1; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs	-1.7	+0.0	-1.9	-0.0	-0.1
mouse	diet=StandardDiet2; sample=FecalPellet; mouse16; day3	+0.3	-2.6	-0.6	-0.2	+0.2
chicken	chicken 21; day 7; diet=StandardDiet; sample=Cecum	-0.4	-2.3	+0.2	+0.1	-0.2
mouse preculture	cage3; mouse2; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs	-1.3	+0.0	-1.1	+0.0	-0.1
mouse	diet=StandardDiet2; sample=FecalPellet; mouse17; day2	-1.8	-0.4	+0.3	-0.4	+0.1
chicken	chicken 5; day 7; diet=StandardDiet; sample=FecalPellet	-0.5	-1.5	+0.1	+0.0	-0.1
chicken coculture	chicken 4; day 4; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron	+0.2	-1.5	-0.0	-0.4	-0.2
chicken	chicken 21; day 7; diet=StandardDiet; sample=Small_intestine	-0.4	-2.1	+0.4	+0.1	+0.2
nutrient dropout	CDM1 without Glycine	-2.1	+0.2	+0.0	+0.2	-0.1
mouse	diet=StandardDiet2; sample=FecalPellet; mouse16; day4	+0.4	-2.6	+0.2	+0.1	+0.2
nutrient dropout	CDM1 without Lysine	-1.1	-0.9	+0.4	+0.3	+0.0
mouse	diet=HighFatHighSugar; sample=FecalPellet; mouse12; day2	-1.3	-0.6	+0.4	+0.1	+0.2
mouse	diet=StandardDiet2; sample=FecalPellet; mouse17; day3	-1.1	-0.3	+0.3	+0.3	-0.2
mouse	diet=HighFatHighSugar; sample=FecalPellet; mouse14; day3	-0.7	-0.1	-0.8	+0.2	+0.3
nutrient dropout	CDM1 without Phenylalanine	-0.2	+0.6	-0.7	-0.3	-0.4
mouse	diet=StandardDiet2; sample=FecalPellet; mouse16; day2	+0.3	-1.8	+0.5	+0.1	+0.1
mouse	diet=HighFatHighSugar; sample=FecalPellet; mouse11; day3	-0.9	-0.8	+0.3	+0.5	+0.4
nutrient dropout	CDM1 without Lysine	-0.3	-1.0	+0.7	+0.3	-0.0
nutrient dropout	CDM1 without Glycine	-1.7	+0.1	+0.5	+0.7	+0.3
stress	Recovery broth with Streptomycin 0.3 mM	+1.5	+0.8	-1.0	-0.2	+0.0
nutrient dropout	CDM1 without Proline	+0.7	-0.1	+0.7	+0.4	-0.3
nutrient dropout	CDM1 without Cysteine	+1.4	-0.2	+0.9	-0.0	-0.1
nutrient dropout	CDM1 without Serine	+0.8	+0.0	+0.8	+0.5	-0.1
stress	Recovery broth with Streptomycin 0.3 mM	+1.9	+0.9	-0.6	-0.0	+0.1
nutrient dropout	CDM1 without Methionine	+1.4	+0.0	+0.7	+0.3	+0.0
stress	Recovery broth with Cerulenin 0.9 mM	+2.1	+0.5	-0.1	+0.1	+0.1
nutrient dropout	CDM1 without Glutamate	+0.8	-0.2	+1.7	+0.6	+0.1
stress	Recovery broth with Cetomacrogol 1000 0.5 mM	+2.5	+0.6	+0.5	+0.1	+0.0
stress	Recovery broth with acetate 350 mM	+4.4	+0.5	+0.2	+0.3	+0.0
stress	Recovery broth with Cetomacrogol 1000 4.0 mM	+8.7	+0.2	+0.6	+0.1	+0.2