Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS12075 and BBR_RS12080 are separated by 193 nucleotidesBBR_RS12080 and BBR_RS12085 are separated by 45 nucleotidesBBR_RS12085 and BBR_RS12090 are separated by 264 nucleotidesBBR_RS12090 and BBR_RS12095 are separated by 11 nucleotides BBR_RS12075: BBR_RS12075 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 457,300 to 458,217 _RS12075 BBR_RS12080: BBR_RS12080 - NAD(P)-dependent glycerol-3-phosphate dehydrogenase, at 458,411 to 459,412 _RS12080 BBR_RS12085: BBR_RS12085 - D-alanine--D-alanine ligase A, at 459,458 to 460,645 _RS12085 BBR_RS12090: BBR_RS12090 - Solute-binding protein of ABC transporter system, at 460,910 to 462,076 _RS12090 BBR_RS12095: BBR_RS12095 - Permease of ABC transporter system, at 462,088 to 463,026 _RS12095
Group Condition BBR_RS12075 BBR_RS12080 BBR_RS12085 BBR_RS12090 BBR_RS12095
chicken chicken 5; day 7; diet=StandardDiet; sample=FecalPellet N.D. N.D. N.D. -0.5 -0.4
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse13; day2 N.D. N.D. N.D. -0.2 -0.6
stress Recovery broth with Nitrofurantoin 0.05 mM N.D. N.D. N.D. -0.5 -0.2
chicken chicken 2; day 6; diet=StandardDiet; sample=FecalPellet N.D. N.D. N.D. -0.2 -0.4
chicken coculture chicken 2; day 7; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron N.D. N.D. N.D. -0.5 -0.1
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse11; day3 N.D. N.D. N.D. -0.6 +0.0
supernatant CDM1Gut with 50% spent media from Escherichia fergusonnii TT2 N.D. N.D. N.D. +0.1 -0.6
chicken coculture chicken 4; day 3; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron N.D. N.D. N.D. +0.2 -0.6
mouse preculture cage3; mouse3; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs N.D. N.D. N.D. +0.3 -0.5
stress Recovery broth with Thioridazine 0.1 mM N.D. N.D. N.D. +0.3 -0.4
stress timecourse MRS + carbenicillin Time8hr N.D. N.D. N.D. -0.4 +0.3
stress timecourse MRS + carbenicillin Time9hr N.D. N.D. N.D. -0.3 +0.2
chicken coculture chicken 4; day 4; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron N.D. N.D. N.D. +0.3 -0.3
chicken chicken 21; day 7; diet=StandardDiet; sample=Small_intestine N.D. N.D. N.D. -0.3 +0.4
carbon source reconstituted MRS with Difucosyllactose 7.9 mM N.D. N.D. N.D. -0.3 +0.5
nutrient dropout CDM1 with Glycine Leucine Cysteine Methionine Glutamate as the only aminos N.D. N.D. N.D. +0.4 -0.2
mrs timecourse MRS Time24hr N.D. N.D. N.D. -0.1 +0.5
mrs timecourse MRS Time24hr N.D. N.D. N.D. -0.1 +0.5
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day6 N.D. N.D. N.D. -0.1 +0.5
nutrient dropout CDM1 without Adenine N.D. N.D. N.D. +0.5 -0.0
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day6 N.D. N.D. N.D. -0.1 +0.6
nutrient dropout control CDM1 N.D. N.D. N.D. +0.4 +0.1
nutrient dropout CDM1 without Guanine N.D. N.D. N.D. +0.5 +0.0
nutrient dropout CDM1 without Leucine N.D. N.D. N.D. +0.3 +0.2
nutrient dropout CDM1 without Tyrosine N.D. N.D. N.D. +0.4 +0.2
nutrient dropout CDM1 without LipoicAcid N.D. N.D. N.D. +0.5 +0.1
nutrient dropout CDM1 without Valine N.D. N.D. N.D. +0.4 +0.2
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse15; day3 N.D. N.D. N.D. +0.4 +0.3
nutrient dropout CDM1 without Serine N.D. N.D. N.D. +0.5 +0.2
stress Recovery broth with 3-Acetylpyridine 0.04 mM N.D. N.D. N.D. +0.2 +0.6
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