Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS11815 and BBR_RS11820 are separated by 246 nucleotidesBBR_RS11820 and BBR_RS11825 are separated by 86 nucleotidesBBR_RS11825 and BBR_RS11830 are separated by 100 nucleotidesBBR_RS11830 and BBR_RS11835 are separated by 63 nucleotides BBR_RS11815: BBR_RS11815 - DUF3416 domain-containing protein, at 408,725 to 410,953 _RS11815 BBR_RS11820: BBR_RS11820 - hypothetical protein, at 411,200 to 413,134 _RS11820 BBR_RS11825: BBR_RS11825 - glycoside hydrolase, at 413,221 to 413,841 _RS11825 BBR_RS11830: BBR_RS11830 - holin, at 413,942 to 414,217 _RS11830 BBR_RS11835: BBR_RS11835 - ribbon-helix-helix protein, CopG family, at 414,281 to 414,592 _RS11835
Group Condition BBR_RS11815 BBR_RS11820 BBR_RS11825 BBR_RS11830 BBR_RS11835
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day3 N.D. -0.1 -0.9 +0.0 -1.3
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day6 N.D. -0.0 -0.8 -0.4 -1.0
supernatant CDM1Gut with 50% spent media from Escherichia fergusonnii TT2 N.D. +0.2 -0.1 -1.0 -1.1
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6 N.D. +0.0 -0.3 -0.6 -0.9
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day4 N.D. -0.0 -0.3 -0.1 -1.2
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day5 N.D. +0.0 -0.6 -0.6 -0.4
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day5 N.D. -0.1 -0.3 -0.3 -0.9
mouse diet=StandardDiet; sample=FecalPellet; mouse4; day3 N.D. -0.1 -0.2 -0.3 -0.9
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day4 N.D. +0.0 -0.2 +0.1 -1.4
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day4 N.D. -0.3 -0.2 -0.3 -0.7
chicken coculture chicken 4; day 4; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron N.D. -0.1 -0.3 -0.1 -1.1
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day4 N.D. -0.0 -0.2 -0.4 -0.8
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day5 N.D. -0.1 -0.2 -0.2 -1.0
mouse mouse 10; day 1; diet=PolysaccharideDeficient; sample=FecalPellet N.D. +0.3 -0.0 -1.1 -0.3
nutrient dropout CDM1 without Phenylalanine N.D. -0.2 -0.2 +0.3 -1.0
stress Recovery broth with Ciprofloxacin 0.1 mM N.D. -0.1 +0.2 +0.1 -1.2
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day4 N.D. -0.1 -0.3 +0.3 -0.9
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse11; day3 N.D. -0.2 +0.4 +0.3 -0.8
nutrient dropout CDM1 without Cysteine N.D. -0.3 +0.6 +0.3 -0.4
nutrient dropout CDM1 without Phenylalanine N.D. -0.4 -0.2 +0.7 +0.4
nutrient dropout CDM1 without Leucine N.D. -0.4 +0.6 +0.5 -0.2
nutrient dropout CDM1 without LipoicAcid N.D. -0.3 +0.6 +0.5 -0.2
nutrient dropout CDM1 without Alanine N.D. -0.4 +0.6 +0.3 +0.3
nutrient dropout CDM1 without Isoleucine N.D. -0.5 +0.5 +0.3 +0.5
nutrient dropout CDM1 without Adenine N.D. -0.4 +0.5 +0.6 +0.3
nutrient dropout CDM1 without Histidine N.D. -0.3 +0.2 +0.6 +0.5
nutrient dropout CDM1 without Lysine N.D. -0.2 +0.5 +0.5 +0.3
nutrient dropout CDM1 without Lysine N.D. -0.2 +0.4 +0.4 +0.5
nutrient dropout CDM1 without Asparagine N.D. -0.2 +0.6 +0.7 +0.1
nutrient dropout CDM1 without Glycine N.D. +0.1 +0.6 +0.5 +0.5
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