Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS11470 and BBR_RS11475 are separated by 122 nucleotidesBBR_RS11475 and BBR_RS11480 overlap by 4 nucleotidesBBR_RS11480 and BBR_RS11485 are separated by 474 nucleotidesBBR_RS11485 and BBR_RS11490 are separated by 79 nucleotides BBR_RS11470: BBR_RS11470 - 6-phosphogluconolactonase, at 329,709 to 330,551 _RS11470 BBR_RS11475: BBR_RS11475 - oxidoreductase, at 330,674 to 331,696 _RS11475 BBR_RS11480: BBR_RS11480 - glucose-6-phosphate dehydrogenase, at 331,693 to 333,231 _RS11480 BBR_RS11485: BBR_RS11485 - serine hydrolase, at 333,706 to 335,397 _RS11485 BBR_RS11490: BBR_RS11490 - tRNA-Lys, at 335,477 to 335,552 _RS11490
Group Condition BBR_RS11470 BBR_RS11475 BBR_RS11480 BBR_RS11485 BBR_RS11490
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day3 -3.7 N.D. N.D. -0.7 N.D.
nutrient dropout control CDM1 -4.0 N.D. N.D. -0.4 N.D.
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day4 -3.5 N.D. N.D. -0.9 N.D.
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse13; day1 -3.9 N.D. N.D. -0.3 N.D.
mouse mouse 11; day 1; diet=HighFatHighSugar; sample=FecalPellet -3.8 N.D. N.D. -0.2 N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day2 -3.9 N.D. N.D. -0.1 N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day2 -3.9 N.D. N.D. -0.1 N.D.
mouse diet=StandardDiet2; sample=FecalPellet; mouse18; day3 -3.8 N.D. N.D. -0.2 N.D.
mouse diet=StandardDiet2; sample=FecalPellet; mouse18; day2 -3.9 N.D. N.D. -0.1 N.D.
stress Recovery broth with Clotrimazole 0.2 mM -3.3 N.D. N.D. -0.7 N.D.
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse14; day2 -3.9 N.D. N.D. -0.1 N.D.
chicken chicken 10; day 5; diet=StandardDiet; sample=FecalPellet -2.8 N.D. N.D. -1.1 N.D.
chicken chicken 1; day 2; diet=StandardDiet; sample=FecalPellet -3.1 N.D. N.D. -0.8 N.D.
chicken chicken 21; day 7; diet=StandardDiet; sample=Cecum -2.3 N.D. N.D. -1.7 N.D.
chicken chicken 5; day 6; diet=StandardDiet; sample=FecalPellet -2.9 N.D. N.D. -1.0 N.D.
chicken chicken 21; day 7; diet=StandardDiet; sample=Small_intestine -2.2 N.D. N.D. -1.7 N.D.
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse15; day2 -3.8 N.D. N.D. -0.1 N.D.
mouse diet=StandardDiet2; sample=FecalPellet; mouse18; day4 -3.8 N.D. N.D. -0.1 N.D.
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse11; day1 -3.9 N.D. N.D. +0.0 N.D.
mouse diet=StandardDiet2; sample=FecalPellet; mouse17; day2 -3.8 N.D. N.D. -0.1 N.D.
stress Recovery broth with Ciprofloxacin 0.1 mM -3.8 N.D. N.D. -0.0 N.D.
nutrient dropout CDM1 without Phenylalanine -3.6 N.D. N.D. -0.3 N.D.
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse14; day1 -3.8 N.D. N.D. -0.0 N.D.
stress Recovery broth with Benzethonium chloride 0.1 mM -3.8 N.D. N.D. -0.1 N.D.
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse12; day1 -3.9 N.D. N.D. +0.1 N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day3 -3.9 N.D. N.D. +0.1 N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day1 -3.8 N.D. N.D. +0.1 N.D.
stress control Recovery broth -3.8 N.D. N.D. +0.1 N.D.
stress Recovery broth with Nisin from Lactococcus lactis 0.001 mM -3.3 N.D. N.D. +0.7 N.D.
stress Recovery broth with Bicyclomycin 0.07 mM +4.4 N.D. N.D. +0.2 N.D.
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