Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS11220 and BBR_RS11225 are separated by 142 nucleotidesBBR_RS11225 and BBR_RS11230 are separated by 113 nucleotidesBBR_RS11230 and BBR_RS11235 are separated by 437 nucleotidesBBR_RS11235 and BBR_RS11240 are separated by 244 nucleotides BBR_RS11220: BBR_RS11220 - YbhB/YbcL family Raf kinase inhibitor-like protein, at 262,694 to 263,248 _RS11220 BBR_RS11225: BBR_RS11225 - dipeptidase, at 263,391 to 264,992 _RS11225 BBR_RS11230: BBR_RS11230 - formate--tetrahydrofolate ligase, at 265,106 to 266,623 _RS11230 BBR_RS11235: BBR_RS11235 - hypothetical protein, at 267,061 to 267,408 _RS11235 BBR_RS11240: BBR_RS11240 - GtrA family protein, at 267,653 to 268,189 _RS11240
Group Condition BBR_RS11220 BBR_RS11225 BBR_RS11230 BBR_RS11235 BBR_RS11240
chicken coculture chicken 4; day 3; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron -1.6 -0.4 N.D. -1.2 -6.2
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day4 -0.2 -0.1 N.D. -0.2 -7.5
chicken coculture chicken 4; day 4; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron -2.9 -1.0 N.D. -0.7 -3.2
chicken chicken 21; day 7; diet=StandardDiet; sample=Cecum -1.5 -0.6 N.D. +0.1 -4.9
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6 -0.7 -0.6 N.D. -0.1 -5.4
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day4 -0.2 -0.2 N.D. +0.2 -6.4
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day4 -0.0 -0.1 N.D. +0.3 -6.5
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day5 -0.2 -0.1 N.D. -0.2 -5.6
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day5 -0.1 -0.2 N.D. -0.0 -5.9
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day6 -0.3 -0.3 N.D. -0.1 -5.4
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day6 -0.4 -0.2 N.D. +0.3 -5.5
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day5 -0.3 -0.0 N.D. -0.1 -5.2
chicken chicken 5; day 6; diet=StandardDiet; sample=FecalPellet -2.7 -0.5 N.D. -0.1 -2.3
chicken chicken 3; day 3; diet=StandardDiet; sample=FecalPellet -2.2 -0.1 N.D. -0.1 -2.9
chicken chicken 2; day 6; diet=StandardDiet; sample=FecalPellet -1.9 -1.6 N.D. -0.3 -1.6
chicken chicken 10; day 4; diet=StandardDiet; sample=FecalPellet -2.0 -0.3 N.D. -0.1 -2.8
chicken chicken 9; day 2; diet=StandardDiet; sample=FecalPellet -1.8 -0.3 N.D. -0.4 -2.9
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day3 -0.1 -0.1 N.D. +0.2 -5.0
chicken chicken 21; day 7; diet=StandardDiet; sample=Small_intestine -1.5 -0.7 N.D. +0.4 -2.9
chicken chicken 5; day 7; diet=StandardDiet; sample=FecalPellet -2.1 -0.6 N.D. +0.3 -2.2
chicken chicken 10; day 5; diet=StandardDiet; sample=FecalPellet -2.1 -0.3 N.D. -0.1 -2.2
mouse coculture cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -0.4 -0.6 N.D. -0.1 -3.6
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day6 -0.3 +0.0 N.D. +0.5 -4.8
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse11; day3 +0.3 -0.1 N.D. -0.3 -4.2
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day4 +0.0 -0.1 N.D. -0.1 -4.0
nutrient dropout CDM1 without Glycine -3.8 -0.1 N.D. -0.2 +0.4
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day4 -0.2 -0.0 N.D. +0.2 -3.7
mouse diet=StandardDiet2; sample=FecalPellet; mouse18; day3 -0.0 -0.2 N.D. +0.5 -3.7
nutrient dropout CDM1 with Glycine Leucine Cysteine Methionine Glutamate as the only aminos -3.3 -0.4 N.D. +0.2 +1.5
nutrient dropout CDM1 without Phenylalanine -3.6 -0.3 N.D. -0.1 +2.1
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BBR_RS11220
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BBR_RS11225
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BBR_RS11240
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