Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS11175 and BBR_RS11180 are separated by 383 nucleotidesBBR_RS11180 and BBR_RS11185 are separated by 103 nucleotidesBBR_RS11185 and BBR_RS11190 are separated by 318 nucleotidesBBR_RS11190 and BBR_RS11195 overlap by 4 nucleotides BBR_RS11175: BBR_RS11175 - penicillin-binding protein, at 248,656 to 251,010 _RS11175 BBR_RS11180: BBR_RS11180 - phosphatase PAP2 family protein, at 251,394 to 252,572 _RS11180 BBR_RS11185: BBR_RS11185 - type I DNA topoisomerase, at 252,676 to 255,726 _RS11185 BBR_RS11190: BBR_RS11190 - dTMP kinase, at 256,045 to 256,665 _RS11190 BBR_RS11195: BBR_RS11195 - DNA polymerase III subunit delta', at 256,662 to 257,813 _RS11195
Group Condition BBR_RS11175 BBR_RS11180 BBR_RS11185 BBR_RS11190 BBR_RS11195
chicken coculture chicken 4; day 4; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron -3.8 -2.8 -3.8 N.D. N.D.
chicken chicken 2; day 5; diet=StandardDiet; sample=FecalPellet -3.5 -4.3 -1.3 N.D. N.D.
chicken chicken 5; day 7; diet=StandardDiet; sample=FecalPellet -3.5 -2.8 -2.7 N.D. N.D.
chicken coculture chicken 2; day 7; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron -3.3 -2.3 -3.3 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day6 -2.1 -4.2 -2.4 N.D. N.D.
chicken chicken 5; day 6; diet=StandardDiet; sample=FecalPellet -3.9 -3.6 -0.9 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day5 -1.6 -3.6 -3.2 N.D. N.D.
stress Recovery broth with Isovaleric 100 mM -1.9 -0.6 -5.6 N.D. N.D.
chicken chicken 21; day 7; diet=StandardDiet; sample=Cecum -2.4 -3.3 -2.2 N.D. N.D.
chicken chicken 3; day 2; diet=StandardDiet; sample=FecalPellet -3.5 -3.8 -0.4 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day6 -1.5 -3.1 -3.0 N.D. N.D.
chicken chicken 3; day 3; diet=StandardDiet; sample=FecalPellet -3.4 -4.3 +0.1 N.D. N.D.
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day3 -2.0 -3.0 -2.6 N.D. N.D.
chicken chicken 10; day 4; diet=StandardDiet; sample=FecalPellet -3.9 -2.9 -0.7 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day4 -1.5 -2.8 -3.2 N.D. N.D.
chicken chicken 2; day 6; diet=StandardDiet; sample=FecalPellet -2.7 -3.8 -1.0 N.D. N.D.
chicken chicken 10; day 5; diet=StandardDiet; sample=FecalPellet -3.5 -3.2 -0.0 N.D. N.D.
chicken coculture chicken 4; day 3; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron -3.7 -2.3 -0.7 N.D. N.D.
stress Recovery broth with Cephradine 0.05 mM -4.4 -0.9 -1.4 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day4 -1.4 -2.9 -2.3 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day5 -1.1 -3.4 -2.2 N.D. N.D.
mouse coculture cage2; mouse2; day2; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482 -1.7 -0.3 -4.6 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day4 -1.3 -3.4 -1.9 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day3 -1.9 -3.8 -0.9 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day5 -2.0 -3.5 -1.1 N.D. N.D.
stress Recovery broth with Nafcillin 1e-04 mM -4.4 -0.8 -1.3 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day6 -1.2 -4.2 -1.0 N.D. N.D.
stress Recovery broth with Ticarcillin 2e-04 mM -4.9 -1.0 -0.5 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day5 -1.5 -3.5 -1.3 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day3 -0.9 -1.9 -3.5 N.D. N.D.
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