Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS11165 and BBR_RS20600 overlap by 33 nucleotidesBBR_RS20600 and BBR_RS11170 are separated by 81 nucleotidesBBR_RS11170 and BBR_RS11175 are separated by 158 nucleotidesBBR_RS11175 and BBR_RS11180 are separated by 383 nucleotides BBR_RS11165: BBR_RS11165 - serine/threonine protein phosphatase, at 244,877 to 246,349 _RS11165 BBR_RS20600: BBR_RS20600 - hypothetical protein, at 246,317 to 246,499 _RS20600 BBR_RS11170: BBR_RS11170 - 2-isopropylmalate synthase, at 246,581 to 248,497 _RS11170 BBR_RS11175: BBR_RS11175 - penicillin-binding protein, at 248,656 to 251,010 _RS11175 BBR_RS11180: BBR_RS11180 - phosphatase PAP2 family protein, at 251,394 to 252,572 _RS11180
Group Condition BBR_RS11165 BBR_RS20600 BBR_RS11170 BBR_RS11175 BBR_RS11180
chicken coculture chicken 2; day 7; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron -1.0 -0.6 -1.7 -3.3 -2.3
chicken chicken 2; day 5; diet=StandardDiet; sample=FecalPellet -0.2 +0.1 -0.7 -3.5 -4.3
chicken chicken 2; day 6; diet=StandardDiet; sample=FecalPellet -0.9 -0.5 -0.7 -2.7 -3.8
chicken coculture chicken 4; day 4; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron +0.2 -0.6 -1.0 -3.8 -2.8
chicken chicken 5; day 6; diet=StandardDiet; sample=FecalPellet +0.3 -0.4 -0.3 -3.9 -3.6
chicken chicken 3; day 3; diet=StandardDiet; sample=FecalPellet +0.3 +0.1 -0.3 -3.4 -4.3
chicken chicken 5; day 7; diet=StandardDiet; sample=FecalPellet -0.0 -0.7 -0.3 -3.5 -2.8
chicken coculture chicken 4; day 3; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron +0.3 -0.8 -0.6 -3.7 -2.3
chicken chicken 10; day 5; diet=StandardDiet; sample=FecalPellet +0.5 -0.6 -0.1 -3.5 -3.2
chicken chicken 3; day 2; diet=StandardDiet; sample=FecalPellet +0.6 +0.2 -0.2 -3.5 -3.8
chicken chicken 10; day 4; diet=StandardDiet; sample=FecalPellet +0.5 -0.2 -0.1 -3.9 -2.9
chicken chicken 21; day 7; diet=StandardDiet; sample=Cecum +0.5 -0.3 -0.9 -2.4 -3.3
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day6 +0.1 +0.0 -0.3 -2.1 -4.2
chicken chicken 1; day 2; diet=StandardDiet; sample=FecalPellet -0.1 +0.2 -0.3 -2.5 -3.6
chicken chicken 21; day 7; diet=StandardDiet; sample=Small_intestine +0.5 -0.1 -0.6 -2.2 -3.8
stress Recovery broth with Carbenicillin 0.001 mM -0.1 -0.2 +0.1 -4.9 -1.1
stress Recovery broth with Ticarcillin 2e-04 mM -0.1 -0.2 -0.0 -4.9 -1.0
stress Recovery broth with Amoxicillin 0.003 mM -0.0 -0.2 +0.1 -4.7 -1.0
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day6 -0.2 -0.1 -0.1 -1.2 -4.2
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day3 -0.0 -0.1 -0.0 -1.9 -3.8
stress Recovery broth with Penicillin G 1e-04 mM -0.0 -0.2 +0.0 -4.6 -0.8
chicken chicken 9; day 2; diet=StandardDiet; sample=FecalPellet +0.2 +0.1 -0.2 -3.6 -2.1
stress Recovery broth with Penicillin G 2e-04 mM -0.0 -0.3 +0.1 -3.8 -1.3
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day5 -0.1 +0.3 -0.1 -2.0 -3.5
stress Recovery broth with Cephradine 0.05 mM +0.1 -0.1 +0.1 -4.4 -0.9
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day4 +0.6 +0.3 -0.2 -1.7 -4.0
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day5 +0.0 +0.2 -0.1 -1.4 -3.7
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day5 +0.5 -0.0 -0.1 -1.6 -3.6
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day3 +0.5 -0.0 -0.1 -2.0 -3.0
nutrient dropout CDM1 without Leucine -0.3 +0.5 -4.7 +0.2 -0.1
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