Fitness for 5 genes in Bifidobacterium breve UCC2003

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 747 experiments or choose conditions or try the comparative fitness browser

500 ntBBR_RS11095 and BBR_RS11100 overlap by 4 nucleotidesBBR_RS11100 and BBR_RS11105 are separated by 29 nucleotidesBBR_RS11105 and BBR_RS11110 overlap by 4 nucleotidesBBR_RS11110 and BBR_RS11115 are separated by 196 nucleotides BBR_RS11095: BBR_RS11095 - DUF4862 domain-containing protein, at 228,001 to 228,909 _RS11095 BBR_RS11100: BBR_RS11100 - ROK family protein, at 228,906 to 229,913 _RS11100 BBR_RS11105: BBR_RS11105 - putative N-acetylmannosamine-6-phosphate 2-epimerase, at 229,943 to 230,611 _RS11105 BBR_RS11110: BBR_RS11110 - alpha/beta hydrolase, at 230,608 to 231,444 _RS11110 BBR_RS11115: BBR_RS11115 - ABC transporter substrate-binding protein, at 231,641 to 233,203 _RS11115
Group Condition BBR_RS11095 BBR_RS11100 BBR_RS11105 BBR_RS11110 BBR_RS11115
mouse preculture cage3; mouse3; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs -3.2 -3.6 -1.7 -0.3 +0.3
mouse preculture cage3; mouse3; day4; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs -2.1 -2.4 -2.2 -0.1 -0.2
mouse preculture cage3; mouse3; day3; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs -1.2 -1.6 -1.3 -0.2 -0.4
mouse preculture cage3; mouse1; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs -1.6 -1.7 -0.4 -0.2 +0.3
mouse preculture cage3; mouse2; day3; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs -0.5 -0.7 -1.1 -0.1 -0.5
mouse coculture cage1; mouse2; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -1.2 -1.3 -0.2 -0.0 -0.0
mouse preculture cage3; mouse1; day3; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs -0.4 -0.7 -0.8 -0.3 -0.5
mouse coculture cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -1.0 -1.1 -0.4 -0.1 +0.0
mouse coculture cage1; mouse3; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -1.0 -1.0 -0.3 +0.0 +0.0
carbon source reconstituted MRS with 3'-sialyllactose 7.6 mM -0.6 -0.7 -0.3 +0.0 -0.7
mouse coculture cage1; mouse2; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -0.9 -1.1 -0.1 -0.0 -0.0
mouse preculture cage3; mouse2; day4; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs -0.9 -0.7 -0.5 -0.1 +0.0
mouse coculture cage1; mouse3; day3; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -0.9 -0.9 -0.2 -0.1 -0.0
carbon source reconstituted MRS with 6'-sialyllactose 7.6 mM -0.6 -0.8 -0.3 -0.0 -0.5
mouse preculture cage3; mouse2; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs -1.3 -1.3 -0.1 +0.1 +0.7
mouse preculture cage3; mouse1; day4; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs -0.6 -0.7 -0.5 -0.0 -0.1
mouse coculture cage1; mouse1; day3; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -0.7 -0.8 -0.1 -0.1 -0.1
mouse coculture cage2; mouse2; day3; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482 -0.4 -0.7 -0.3 +0.0 -0.3
stress Recovery broth with Thioridazine 0.1 mM -0.2 -0.4 -0.4 -0.6 -0.0
mouse coculture cage1; mouse2; day3; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -0.7 -0.7 -0.2 -0.1 +0.0
mouse coculture cage1; mouse1; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -0.7 -0.8 -0.1 -0.1 +0.1
mouse coculture cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -0.7 -0.9 -0.1 -0.0 +0.1
carbon source reconstituted MRS with Amylopectin from maize 10 mg/ml -0.2 -0.9 -0.3 +0.1 -0.1
carbon source reconstituted MRS with Amylopectin from maize 10 mg/ml -0.5 -0.7 -0.2 +0.2 -0.0
stress Recovery broth with 3-Acetylpyridine 0.04 mM +0.2 -0.8 +0.2 -0.4 -0.1
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse13; day2 -0.7 -0.5 +0.1 +0.3 +0.2
nutrient dropout CDM1 without Aspartate +0.2 +0.5 +0.6 +0.2 +0.2
nutrient dropout CDM1 without Glutamine +0.2 +0.6 +0.5 +0.1 +0.2
nutrient dropout CDM1 without FolicAcid +0.2 +0.4 +0.5 +0.2 +0.2
nutrient dropout CDM1 without LipoicAcid +0.3 +0.5 +0.5 +0.1 +0.2
remove
BBR_RS11095
plot		 remove
BBR_RS11100
plot		 remove
BBR_RS11105		 remove
BBR_RS11110
plot		 remove
BBR_RS11115
plot