Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS10980 and BBR_RS10985 are separated by 221 nucleotidesBBR_RS10985 and BBR_RS10990 are separated by 44 nucleotidesBBR_RS10990 and BBR_RS10995 are separated by 120 nucleotidesBBR_RS10995 and BBR_RS20570 overlap by 31 nucleotides BBR_RS10980: BBR_RS10980 - TetR/AcrR family transcriptional regulator, at 203,290 to 203,889 _RS10980 BBR_RS10985: BBR_RS10985 - DNA polymerase III subunit gamma and tau, at 204,111 to 206,843 _RS10985 BBR_RS10990: BBR_RS10990 - recombination protein RecR, at 206,888 to 207,490 _RS10990 BBR_RS10995: BBR_RS10995 - ATP-binding protein, at 207,611 to 207,934 _RS10995 BBR_RS20570: BBR_RS20570 - hypothetical protein, at 207,904 to 208,176 _RS20570
Group Condition BBR_RS10980 BBR_RS10985 BBR_RS10990 BBR_RS10995 BBR_RS20570
mouse diet=StandardDiet2; sample=FecalPellet; mouse17; day2 -7.2 N.D. -4.7 -0.2 -0.4
mouse diet=StandardDiet2; sample=FecalPellet; mouse17; day4 -6.2 N.D. -4.3 -0.4 -0.2
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse12; day2 -4.7 N.D. -6.2 +0.2 -0.3
mouse diet=StandardDiet2; sample=FecalPellet; mouse17; day3 -6.1 N.D. -4.0 -0.1 -0.3
mouse diet=StandardDiet2; sample=FecalPellet; mouse17; day1 -7.2 N.D. -2.4 -0.0 -0.4
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day3 -6.4 N.D. -3.3 -0.3 +0.0
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day1 -7.0 N.D. -3.6 +0.4 +0.3
mouse diet=StandardDiet2; sample=FecalPellet; mouse18; day4 -4.8 N.D. -4.9 +0.2 -0.4
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day4 -5.9 N.D. -3.5 -0.1 -0.1
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day3 -5.2 N.D. -4.1 -0.1 -0.1
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day3 -5.5 N.D. -4.3 +0.3 -0.0
mouse mouse 1; day 2; diet=StandardDiet; sample=FecalPellet -6.1 N.D. -2.8 -0.1 -0.2
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day4 -4.1 N.D. -5.0 -0.2 +0.1
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day4 -6.2 N.D. -2.7 -0.2 -0.0
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day3 -6.2 N.D. -2.9 +0.2 -0.2
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day2 -6.8 N.D. -2.3 +0.1 -0.1
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day5 -5.1 N.D. -3.6 +0.2 -0.5
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day5 -5.2 N.D. -3.2 -0.4 -0.1
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day4 -5.1 N.D. -3.4 +0.1 -0.4
mouse diet=StandardDiet2; sample=FecalPellet; mouse18; day3 -4.6 N.D. -4.0 -0.1 +0.1
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day6 -4.5 N.D. -2.7 -0.7 -0.6
mouse coculture cage1; mouse3; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -4.2 N.D. -3.9 +0.1 -0.3
mouse diet=StandardDiet; sample=FecalPellet; mouse4; day3 -4.2 N.D. -3.2 -0.4 -0.3
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day4 -4.4 N.D. -2.7 -0.0 -0.8
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day3 -3.9 N.D. -3.8 +0.2 -0.3
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse12; day1 -3.8 N.D. -3.7 -0.4 +0.2
mouse mouse 2; day 1; diet=StandardDiet; sample=FecalPellet -4.9 N.D. -2.8 -0.2 +0.1
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day2 -4.4 N.D. -3.4 +0.1 +0.1
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day4 -4.7 N.D. -3.0 +0.1 +0.1
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day4 -4.2 N.D. -3.0 +0.5 -0.4
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