Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS10880 and BBR_RS10885 are separated by 184 nucleotidesBBR_RS10885 and BBR_RS10890 are separated by 0 nucleotidesBBR_RS10890 and BBR_RS10895 are separated by 317 nucleotidesBBR_RS10895 and BBR_RS10900 are separated by 246 nucleotides BBR_RS10880: BBR_RS10880 - sugar ABC transporter permease, at 180,269 to 181,150 _RS10880 BBR_RS10885: BBR_RS10885 - hypothetical protein, at 181,335 to 182,138 _RS10885 BBR_RS10890: BBR_RS10890 - LacI family transcriptional regulator, at 182,139 to 183,164 _RS10890 BBR_RS10895: BBR_RS10895 - type I pullulanase, at 183,482 to 188,608 _RS10895 BBR_RS10900: BBR_RS10900 - molecular chaperone DnaK, at 188,855 to 190,735 _RS10900
Group Condition BBR_RS10880 BBR_RS10885 BBR_RS10890 BBR_RS10895 BBR_RS10900
mouse diet=StandardDiet2; sample=FecalPellet; mouse18; day4 +0.3 -0.0 -5.9 -0.1 -3.2
mouse diet=StandardDiet2; sample=FecalPellet; mouse17; day3 +0.2 -0.0 -5.6 -0.1 -3.4
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day4 +0.3 -0.1 -5.8 +0.0 -2.8
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day4 +0.4 +0.1 -5.8 -0.0 -2.9
chicken chicken 2; day 5; diet=StandardDiet; sample=FecalPellet -0.0 +0.0 -5.1 -0.2 -2.8
chicken chicken 5; day 6; diet=StandardDiet; sample=FecalPellet +0.0 -0.1 -4.8 -0.0 -3.1
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day4 +0.4 +0.0 -5.4 -0.0 -2.9
mouse diet=StandardDiet2; sample=FecalPellet; mouse17; day4 +0.3 +0.2 -5.6 -0.1 -2.7
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day4 +0.3 -0.0 -5.2 -0.0 -2.9
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day4 +0.4 -0.0 -5.0 -0.1 -3.0
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day4 +0.3 +0.0 -5.5 -0.1 -2.4
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day3 +0.3 -0.0 -4.4 -0.1 -3.4
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day3 +0.4 +0.1 -5.1 +0.0 -3.1
chicken chicken 10; day 5; diet=StandardDiet; sample=FecalPellet -0.0 -0.1 -4.3 -0.1 -3.1
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day4 +0.5 -0.0 -4.9 -0.0 -3.0
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day3 +0.1 -0.0 -4.1 -0.1 -3.4
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day4 +0.4 +0.1 -5.1 +0.0 -2.8
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day3 +0.4 -0.0 -4.6 -0.1 -3.0
mouse diet=StandardDiet; sample=FecalPellet; mouse4; day3 +0.4 +0.1 -4.1 -0.1 -3.4
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day4 +0.5 +0.1 -5.1 +0.0 -2.4
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day5 +0.4 -0.0 -5.1 -0.1 -2.1
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day5 +0.6 +0.2 -5.0 -0.1 -2.5
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day3 +0.3 +0.1 -4.0 +0.1 -3.2
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day4 +0.5 +0.2 -4.4 -0.0 -2.6
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day5 +0.6 +0.2 -4.8 -0.0 -2.2
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day6 +0.6 +0.2 -4.9 -0.1 -1.8
mouse diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day6 +0.6 +0.3 -4.9 -0.1 -1.7
carbon source reconstituted MRS with Pectin 10 mg/ml -0.1 -0.2 +7.0 -0.1 -0.8
carbon source reconstituted MRS with Amylopectin from maize 10 mg/ml -0.2 -0.3 +9.4 -0.1 -0.7
carbon source reconstituted MRS with Amylopectin from maize 10 mg/ml -0.2 -0.3 +9.4 -0.1 -0.2
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BBR_RS10880
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