Fitness for 5 genes in Bifidobacterium breve UCC2003

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BBR_RS10715	BBR_RS10720	BBR_RS10725	BBR_RS10730	BBR_RS10735
chicken coculture	chicken 4; day 4; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron	-0.7	-5.3	-1.2	N.D.	-4.4
chicken coculture	chicken 4; day 3; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron	-0.5	-5.5	-0.8	N.D.	-4.6
chicken	chicken 1; day 2; diet=StandardDiet; sample=FecalPellet	-0.3	-6.5	-1.0	N.D.	-3.3
chicken	chicken 9; day 2; diet=StandardDiet; sample=FecalPellet	-0.1	-6.4	-0.2	N.D.	-3.4
chicken coculture	chicken 2; day 7; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron	-0.6	-4.6	-1.1	N.D.	-3.6
mouse preculture	cage3; mouse3; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs	-0.3	-5.1	-0.0	N.D.	-4.4
mouse	diet=HighFatHighSugar; sample=FecalPellet; mouse14; day1	-0.1	-5.5	+0.1	N.D.	-3.8
mouse preculture	cage3; mouse1; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs	-0.2	-6.0	-0.1	N.D.	-2.9
mouse preculture	cage3; mouse3; day4; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs	-0.4	-5.5	+0.0	N.D.	-3.2
mouse coculture	cage1; mouse2; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482	-0.1	-7.3	-0.1	N.D.	-0.8
chicken	chicken 5; day 6; diet=StandardDiet; sample=FecalPellet	-0.1	-5.9	-0.2	N.D.	-2.1
mouse	diet=HighFatHighSugar; sample=FecalPellet; mouse14; day2	-0.1	-5.7	+0.1	N.D.	-2.6
mouse preculture	cage3; mouse1; day4; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs	-0.1	-6.1	+0.0	N.D.	-2.1
mouse coculture	cage1; mouse2; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482	-0.2	-7.2	+0.0	N.D.	-0.7
chicken	chicken 2; day 6; diet=StandardDiet; sample=FecalPellet	-0.7	-4.4	-1.3	N.D.	-1.6
mouse coculture	cage1; mouse1; day3; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482	-0.0	-7.5	+0.0	N.D.	-0.5
chicken	chicken 3; day 3; diet=StandardDiet; sample=FecalPellet	-0.2	-6.2	+0.2	N.D.	-1.7
mouse coculture	cage1; mouse3; day3; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482	-0.1	-7.4	-0.0	N.D.	-0.3
mouse preculture	cage3; mouse1; day3; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs	-0.2	-5.8	-0.0	N.D.	-1.8
mouse coculture	cage1; mouse3; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482	-0.1	-7.4	-0.1	N.D.	-0.3
mouse coculture	cage1; mouse2; day3; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482	-0.1	-7.2	-0.0	N.D.	-0.4
mouse	diet=HighFatHighSugar; sample=FecalPellet; mouse13; day1	-0.3	-5.7	+0.3	N.D.	-1.8
chicken	chicken 3; day 2; diet=StandardDiet; sample=FecalPellet	-0.1	-6.3	+0.2	N.D.	-1.1
mouse	diet=HighFatHighSugar; sample=FecalPellet; mouse12; day1	-0.2	-5.8	+0.4	N.D.	-1.1
mouse	diet=StandardDiet2; sample=FecalPellet; mouse16; day3	-0.1	-5.7	-0.4	N.D.	+2.2
mouse	diet=StandardDiet2; sample=FecalPellet; mouse16; day4	-0.2	-5.6	-0.3	N.D.	+2.2
mouse	diet=StandardDiet2; sample=FecalPellet; mouse16; day2	-0.0	-5.6	-0.3	N.D.	+2.1
chicken	chicken 21; day 7; diet=StandardDiet; sample=Cecum	-0.3	-4.8	+0.0	N.D.	+2.5
mouse	diet=StandardDiet; sample=FecalPellet; mouse5; day3	-0.1	-4.9	+0.7	N.D.	+2.1
mouse	diet=StandardDiet; sample=FecalPellet; mouse5; day4	+0.0	-4.7	+0.7	N.D.	+2.2