Fitness for 5 genes in Bifidobacterium breve UCC2003

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BBR_RS10665	BBR_RS10670	BBR_RS10675	BBR_RS10680	BBR_RS10685
stress	Recovery broth with Cetomacrogol 1000 0.5 mM	-3.4	-0.1	+0.0	-0.1	-0.0
chicken	chicken 3; day 2; diet=StandardDiet; sample=FecalPellet	-3.4	-0.1	+0.0	+0.1	+0.1
chicken	chicken 3; day 3; diet=StandardDiet; sample=FecalPellet	-3.2	-0.1	+0.1	+0.0	+0.1
stress	Recovery broth with Streptomycin 0.3 mM	-2.7	-0.2	-0.1	-0.1	+0.2
stress	Recovery broth with Kanamycin sulfate 0.8 mM	-2.6	-0.1	-0.1	-0.0	+0.0
stress	Recovery broth with Neomycin 0.4 mM	-2.7	-0.0	+0.0	-0.0	-0.0
chicken coculture	chicken 4; day 3; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron	-2.4	-0.3	-0.0	+0.1	-0.1
chicken	chicken 10; day 5; diet=StandardDiet; sample=FecalPellet	-2.0	-0.1	-0.4	-0.0	+0.1
stress	Recovery broth with Nisin from Lactococcus lactis 0.001 mM	-2.3	-0.0	-0.0	-0.1	+0.0
chicken coculture	chicken 4; day 4; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron	-2.2	-0.3	-0.0	+0.3	-0.1
chicken coculture	chicken 2; day 7; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron	-2.2	-0.4	+0.2	-0.0	+0.1
carbon source	reconstituted MRS with Inulin 0.8 mM	-2.3	-0.0	+0.0	+0.1	-0.0
chicken	chicken 5; day 6; diet=StandardDiet; sample=FecalPellet	-2.2	+0.0	-0.0	+0.0	-0.1
carbon source	reconstituted MRS with Yacontrol-prebiotic 0.5 %w/v	-2.3	+0.1	+0.0	+0.0	+0.0
chicken	chicken 1; day 2; diet=StandardDiet; sample=FecalPellet	-2.1	-0.2	+0.0	+0.1	-0.0
chicken	chicken 5; day 7; diet=StandardDiet; sample=FecalPellet	-1.9	-0.0	-0.2	+0.0	-0.1
chicken	chicken 2; day 6; diet=StandardDiet; sample=FecalPellet	-2.1	-0.3	+0.2	-0.0	+0.1
stress	Recovery broth with Neomycin 0.8 mM	-2.1	-0.1	+0.0	+0.0	+0.1
stress	Recovery broth with Streptomycin 0.3 mM	-2.0	-0.0	-0.0	+0.1	-0.0
carbon source	reconstituted MRS with Yacontrol-prebiotic 0.5 %w/v	-2.0	+0.0	-0.0	+0.1	-0.1
chicken	chicken 10; day 4; diet=StandardDiet; sample=FecalPellet	-1.9	+0.0	-0.1	+0.0	-0.0
carbon source	reconstituted MRS with Prebiotin-prebiotic 0.5 %w/v	-1.9	-0.0	-0.1	+0.1	-0.0
chicken	chicken 9; day 2; diet=StandardDiet; sample=FecalPellet	-2.1	+0.0	+0.1	+0.1	+0.1
supernatant	CDM1Gut with 50% spent media from Escherichia fergusonnii TT2	-1.4	-0.4	-0.0	+0.1	-0.3
stress	Recovery broth with Amikacin di0.7 mM	-2.0	+0.0	-0.1	+0.1	+0.1
chicken	chicken 2; day 5; diet=StandardDiet; sample=FecalPellet	-2.2	-0.1	+0.2	+0.2	+0.1
mouse	diet=HighFatHighSugar; sample=FecalPellet; mouse12; day2	-1.5	-0.0	+0.5	+0.1	-0.1
chicken	chicken 21; day 7; diet=StandardDiet; sample=Small_intestine	-1.5	+0.0	+0.5	+0.2	-0.0
mouse	diet=StandardDiet2; sample=FecalPellet; mouse17; day1	-1.4	+0.0	+0.5	+0.1	-0.1
mouse	diet=StandardDiet; sample=FecalPellet; mouse1; day3	-0.9	-0.1	+0.9	+0.2	+0.1