Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS10620 and BBR_RS10625 are separated by 4 nucleotidesBBR_RS10625 and BBR_RS10630 are separated by 30 nucleotidesBBR_RS10630 and BBR_RS10635 are separated by 452 nucleotidesBBR_RS10635 and BBR_RS10640 are separated by 304 nucleotides BBR_RS10620: BBR_RS10620 - phosphoprotein phosphatase, at 101,123 to 102,742 _RS10620 BBR_RS10625: BBR_RS10625 - FHA domain-containing protein, at 102,747 to 103,271 _RS10625 BBR_RS10630: BBR_RS10630 - DUF2662 domain-containing protein, at 103,302 to 104,003 _RS10630 BBR_RS10635: BBR_RS10635 - Xaa-Pro dipeptidyl-peptidase, at 104,456 to 107,326 _RS10635 BBR_RS10640: BBR_RS10640 - alpha/beta hydrolase, at 107,631 to 108,722 _RS10640
Group Condition BBR_RS10620 BBR_RS10625 BBR_RS10630 BBR_RS10635 BBR_RS10640
mouse coculture cage1; mouse2; day3; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -8.1 -8.3 N.D. -0.2 -0.3
mouse coculture cage1; mouse3; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -7.7 -7.9 N.D. -0.2 -0.5
mouse coculture cage1; mouse2; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -7.7 -7.9 N.D. -0.3 -0.3
mouse coculture cage1; mouse2; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -7.6 -7.8 N.D. -0.2 -0.3
mouse coculture cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -7.0 -7.2 N.D. -0.4 -0.3
stress Recovery broth with Choline chloride 200 mM -5.0 -5.4 N.D. -0.4 -3.2
stress Recovery broth with chloride 200 mM -4.5 -4.9 N.D. -0.3 -4.3
mouse coculture cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -5.9 -7.2 N.D. -0.3 -0.5
mouse coculture cage1; mouse3; day3; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -8.2 -4.9 N.D. -0.2 -0.4
nutrient dropout CDM1 without Alanine -5.9 -6.3 N.D. +0.1 -0.9
nutrient dropout control CDM1 -5.5 -6.3 N.D. +0.1 -1.3
nutrient dropout control CDM1 -5.1 -6.2 N.D. +0.2 -0.9
mouse coculture cage2; mouse2; day3; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482 -5.3 -6.2 N.D. -0.1 -0.0
mouse coculture cage1; mouse1; day3; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 -6.0 -5.0 N.D. -0.2 -0.4
nutrient dropout CDM1 without Guanine -4.3 -6.4 N.D. +0.2 -1.0
mouse preculture cage3; mouse1; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs -6.4 -4.7 N.D. -0.2 -0.1
stress Recovery broth with acetate 200 mM -4.3 -5.0 N.D. -0.1 -2.0
nutrient dropout control CDM1 -4.4 -6.1 N.D. +0.2 -1.0
nutrient dropout CDM1 without Uracil -4.4 -6.3 N.D. +0.3 -0.9
nutrient dropout CDM1 without Pantothenate -4.3 -6.2 N.D. +0.2 -1.0
nutrient dropout CDM1 without Cytosine -5.6 -5.0 N.D. +0.2 -0.8
nutrient dropout CDM1 without FolicAcid -4.0 -6.3 N.D. +0.3 -1.1
nutrient dropout control CDM1 -5.4 -4.7 N.D. +0.1 -1.1
nutrient dropout CDM1 without Lysine -3.9 -6.2 N.D. +0.2 -1.1
nutrient dropout CDM1 without Biotin -3.8 -6.2 N.D. +0.1 -1.0
nutrient dropout control CDM1 -5.1 -4.7 N.D. +0.2 -1.2
nutrient dropout CDM1 without Cyanocobalamin -5.5 -4.6 N.D. +0.2 -0.9
nutrient dropout CDM1 without Arginine -4.6 -4.9 N.D. +0.2 -1.4
nutrient dropout CDM1 without Asparagine -4.7 -4.7 N.D. +0.3 -1.4
mouse preculture cage3; mouse3; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs -4.2 -6.5 N.D. -0.2 +0.4
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