Fitness for 5 genes in Bifidobacterium breve UCC2003

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 747 experiments or choose conditions or try the comparative fitness browser

500 ntBBR_RS10540 and BBR_RS10545 are separated by 449 nucleotidesBBR_RS10545 and BBR_RS10550 are separated by 534 nucleotidesBBR_RS10550 and BBR_RS10555 are separated by 133 nucleotidesBBR_RS10555 and BBR_RS10560 are separated by 212 nucleotides BBR_RS10540: BBR_RS10540 - hypothetical protein, at 81,110 to 82,099 _RS10540 BBR_RS10545: BBR_RS10545 - amidohydrolase, at 82,549 to 84,168 _RS10545 BBR_RS10550: BBR_RS10550 - tryptophan--tRNA ligase, at 84,703 to 85,794 _RS10550 BBR_RS10555: BBR_RS10555 - DUF3073 domain-containing protein, at 85,928 to 86,311 _RS10555 BBR_RS10560: BBR_RS10560 - hypothetical protein, at 86,524 to 87,093 _RS10560
Group Condition BBR_RS10540 BBR_RS10545 BBR_RS10550 BBR_RS10555 BBR_RS10560
chicken chicken 2; day 5; diet=StandardDiet; sample=FecalPellet -0.1 -0.1 N.D. -4.7 -4.9
chicken chicken 10; day 4; diet=StandardDiet; sample=FecalPellet +0.1 +0.1 N.D. -4.9 -3.7
chicken chicken 1; day 2; diet=StandardDiet; sample=FecalPellet +0.1 -0.0 N.D. -4.1 -4.2
chicken coculture chicken 4; day 4; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron -0.0 -0.1 N.D. -3.9 -4.2
chicken chicken 21; day 7; diet=StandardDiet; sample=Cecum -0.1 +0.0 N.D. -4.2 -3.7
chicken chicken 9; day 2; diet=StandardDiet; sample=FecalPellet -0.0 -0.1 N.D. -5.0 -2.8
chicken coculture chicken 4; day 3; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron +0.0 -0.1 N.D. -4.0 -3.8
chicken chicken 21; day 7; diet=StandardDiet; sample=Small_intestine -0.2 +0.0 N.D. -4.2 -3.4
chicken chicken 3; day 2; diet=StandardDiet; sample=FecalPellet -0.0 +0.0 N.D. -4.9 -2.8
chicken chicken 5; day 7; diet=StandardDiet; sample=FecalPellet +0.0 -0.0 N.D. -3.5 -4.0
chicken chicken 2; day 6; diet=StandardDiet; sample=FecalPellet +0.0 +0.0 N.D. -4.0 -3.1
chicken chicken 5; day 6; diet=StandardDiet; sample=FecalPellet -0.0 +0.0 N.D. -2.3 -4.6
nutrient dropout CDM1 with Glycine Leucine Cysteine Methionine Glutamate as the only aminos -0.2 -0.2 N.D. -5.3 -1.1
mouse diet=StandardDiet2; sample=FecalPellet; mouse18; day3 -0.4 -0.1 N.D. -5.3 -1.0
mouse preculture cage3; mouse1; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs +0.1 -0.3 N.D. -4.9 -1.5
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day4 -0.4 -0.1 N.D. -5.0 -1.0
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day2 -0.2 -0.1 N.D. -5.4 -0.5
nutrient dropout CDM1 without Asparagine -0.5 -0.1 N.D. -5.6 -0.1
nutrient dropout control CDM1 -0.3 -0.1 N.D. -5.6 -0.1
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse13; day2 -0.0 -0.0 N.D. -4.2 -1.7
nutrient dropout CDM1 without Adenine -0.5 -0.1 N.D. -5.5 +0.1
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day4 -0.4 -0.1 N.D. -5.0 -0.6
chicken coculture chicken 2; day 7; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron -0.2 -0.1 N.D. -2.0 -3.7
chicken chicken 3; day 3; diet=StandardDiet; sample=FecalPellet -0.2 +0.1 N.D. -2.5 -3.5
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day3 -0.3 -0.0 N.D. -5.3 -0.3
mouse diet=StandardDiet2; sample=FecalPellet; mouse17; day3 -0.2 -0.0 N.D. -5.1 -0.5
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day3 -0.1 +0.1 N.D. -5.3 -0.4
mouse preculture cage3; mouse3; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs +0.4 +0.1 N.D. -4.4 -1.0
stress Recovery broth with Nitrofurantoin 0.03 mM +0.1 +0.1 N.D. +1.1 -4.9
stress Recovery broth with Metronidazole 0.03 mM -0.0 +0.1 N.D. +3.4 -5.1
remove
BBR_RS10540
plot		 remove
BBR_RS10545
plot		 remove
BBR_RS10550		 remove
BBR_RS10555
plot		 remove
BBR_RS10560
plot