Fitness for 5 genes in Bifidobacterium breve UCC2003

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500 ntBBR_RS10535 and BBR_RS10540 are separated by 487 nucleotidesBBR_RS10540 and BBR_RS10545 are separated by 449 nucleotidesBBR_RS10545 and BBR_RS10550 are separated by 534 nucleotidesBBR_RS10550 and BBR_RS10555 are separated by 133 nucleotides BBR_RS10535: BBR_RS10535 - sodium/proline symporter, at 79,012 to 80,622 _RS10535 BBR_RS10540: BBR_RS10540 - hypothetical protein, at 81,110 to 82,099 _RS10540 BBR_RS10545: BBR_RS10545 - amidohydrolase, at 82,549 to 84,168 _RS10545 BBR_RS10550: BBR_RS10550 - tryptophan--tRNA ligase, at 84,703 to 85,794 _RS10550 BBR_RS10555: BBR_RS10555 - DUF3073 domain-containing protein, at 85,928 to 86,311 _RS10555
Group Condition BBR_RS10535 BBR_RS10540 BBR_RS10545 BBR_RS10550 BBR_RS10555
nutrient dropout CDM1 without Adenine -0.3 -0.5 -0.1 N.D. -5.5
nutrient dropout CDM1 without Asparagine -0.2 -0.5 -0.1 N.D. -5.6
nutrient dropout control CDM1 -0.2 -0.3 -0.1 N.D. -5.6
nutrient dropout CDM1 with Glycine Leucine Cysteine Methionine Glutamate as the only aminos -0.2 -0.2 -0.2 N.D. -5.3
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day2 +0.0 -0.2 -0.1 N.D. -5.4
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day2 -0.0 -0.1 -0.0 N.D. -5.4
mouse diet=StandardDiet2; sample=FecalPellet; mouse18; day3 +0.2 -0.4 -0.1 N.D. -5.3
nutrient dropout CDM1 without Glycine -0.2 -0.3 +0.1 N.D. -5.2
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day3 +0.2 -0.3 -0.0 N.D. -5.3
mouse diet=StandardDiet2; sample=FecalPellet; mouse16; day4 +0.1 -0.4 -0.1 N.D. -5.0
mouse diet=StandardDiet; sample=FecalPellet; mouse2; day4 +0.0 -0.4 -0.1 N.D. -5.0
mouse diet=StandardDiet2; sample=FecalPellet; mouse17; day3 +0.0 -0.2 -0.0 N.D. -5.1
mouse diet=StandardDiet; sample=FecalPellet; mouse1; day3 +0.0 -0.1 +0.1 N.D. -5.3
nutrient dropout control CDM1 -0.2 -0.4 -0.1 N.D. -4.5
mouse preculture cage3; mouse1; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs -0.0 +0.1 -0.3 N.D. -4.9
nutrient dropout CDM1 without Valine -0.2 -0.3 -0.1 N.D. -4.6
nutrient dropout CDM1 without Alanine -0.2 -0.4 -0.0 N.D. -4.6
nutrient dropout CDM1 without Proline -0.1 -0.4 -0.1 N.D. -4.5
nutrient dropout control CDM1 -0.2 -0.3 -0.0 N.D. -4.5
chicken chicken 9; day 2; diet=StandardDiet; sample=FecalPellet +0.0 -0.0 -0.1 N.D. -5.0
nutrient dropout CDM1 without Glycine +0.1 -0.1 -0.1 N.D. -5.0
chicken chicken 2; day 5; diet=StandardDiet; sample=FecalPellet -0.2 -0.1 -0.1 N.D. -4.7
nutrient dropout CDM1 without Serine -0.2 -0.3 -0.0 N.D. -4.6
mouse diet=StandardDiet; sample=FecalPellet; mouse5; day4 +0.1 -0.1 +0.1 N.D. -4.9
chicken chicken 3; day 2; diet=StandardDiet; sample=FecalPellet +0.0 -0.0 +0.0 N.D. -4.9
chicken chicken 10; day 4; diet=StandardDiet; sample=FecalPellet -0.0 +0.1 +0.1 N.D. -4.9
mouse diet=StandardDiet; sample=FecalPellet; mouse3; day4 +0.1 -0.6 -0.1 N.D. -4.1
mouse diet=HighFatHighSugar; sample=FecalPellet; mouse12; day2 +0.1 -0.1 -0.0 N.D. -4.6
mouse preculture cage3; mouse3; day3; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs +0.1 +0.1 -0.0 N.D. -4.6
mouse preculture cage3; mouse3; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs -0.0 +0.4 +0.1 N.D. -4.4
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