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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_973 and Ac3H11_974 are separated by 74 nucleotides
Ac3H11_974 and Ac3H11_975 are separated by 56 nucleotides
Ac3H11_975 and Ac3H11_976 are separated by 192 nucleotides
Ac3H11_976 and Ac3H11_977 are separated by 71 nucleotides
Ac3H11_973 - Putative analog of CcoH, COG3198, at 96,334 to 96,609
_973
Ac3H11_974 - Probable transmembrane protein, at 96,684 to 96,977
_974
Ac3H11_975 - transcriptional regulator, Crp/Fnr family, at 97,034 to 97,756
_975
Ac3H11_976 - Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22), at 97,949 to 99,331
_976
Ac3H11_977 - Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein, at 99,403 to 100,080
_977
Group
Condition
Ac3H11
_973
Ac3H11
_974
Ac3H11
_975
Ac3H11
_976
Ac3H11
_977
motility
inner cut, R2A soft agar motility assay
-0.5
+0.4
N.D.
+0.1
-4.1
carbon source
a-Ketoglutaric (C)
-0.3
+0.1
N.D.
-0.2
-3.6
motility
inner cut, R2A soft agar motility assay
-0.2
-0.1
N.D.
-0.2
-2.8
carbon source
L-Arabinose (C)
-0.9
+0.1
N.D.
-0.0
-2.4
temperature
LB 30C
-1.0
+0.1
N.D.
-0.1
-2.1
carbon source
D-Lactate (C)
-0.6
+0.2
N.D.
+0.0
-2.6
carbon source
D-Lactate (C)
-1.2
+0.2
N.D.
-0.0
-1.4
stress
Nickel (II) chloride 0.8 mM
-1.0
-0.3
N.D.
-0.0
-1.0
carbon source
pyruvate (C)
-0.0
+0.1
N.D.
-0.1
-2.0
carbon source
a-Ketoglutaric (C)
+0.5
-0.2
N.D.
-0.3
-1.8
temperature
LB 30C
-0.7
+0.1
N.D.
-0.1
-1.0
carbon source
D-Galactose (C)
-0.4
+0.1
N.D.
-0.1
-1.3
carbon source
L-Arabinose (C)
-0.5
+0.1
N.D.
-0.0
-1.3
lb
LB
-0.7
+0.1
N.D.
+0.1
-1.1
carbon source
D,L-Lactate (C)
-0.4
+0.2
N.D.
+0.0
-1.2
stress
Cisplatin 0.0025 mg/ml
-0.0
+0.3
N.D.
+0.5
-1.8
stress
Cisplatin 0.005 mg/ml
+0.2
+0.1
N.D.
+0.5
-1.6
stress
D-Cycloserine 0.05 mg/ml
+0.5
+0.3
N.D.
-0.3
-0.6
carbon source
L-Asparagine (C)
-0.6
+0.1
N.D.
-0.3
+0.9
nitrogen source
D-Alanine (N)
+0.7
-0.7
N.D.
-0.3
+0.7
pH
LB, pH10
-0.5
-0.1
N.D.
+0.3
+1.3
stress
Doxycycline hyclate 0.000025 mg/ml
+0.4
-0.1
N.D.
-0.3
+1.1
nitrogen source
Uridine (N)
+1.0
-0.0
N.D.
-0.4
+0.6
nitrogen source
L-Threonine (N)
+1.0
-0.1
N.D.
-0.3
+1.0
stress
Paraquat dichloride 0.01 mg/ml
-0.1
+0.4
N.D.
+0.7
+0.7
stress
Zinc 1 mM
-0.1
+0.0
N.D.
+0.8
+1.0
stress
Sisomicin 0.001 mg/ml
+0.7
-0.2
N.D.
+0.7
+0.7
stress
copper (II) chloride 1 mM
+0.7
+0.2
N.D.
+0.8
+1.4
stress
copper (II) chloride 2 mM
+1.0
+0.2
N.D.
+0.7
+1.7
nitrogen source
Ammonium chloride (N)
+2.0
+0.3
N.D.
-0.6
+2.5
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