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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_928 and Ac3H11_929 are separated by 90 nucleotides
Ac3H11_929 and Ac3H11_930 are separated by 8 nucleotides
Ac3H11_930 and Ac3H11_931 are separated by 321 nucleotides
Ac3H11_931 and Ac3H11_932 are separated by 133 nucleotides
Ac3H11_928 - Glutamate Aspartate periplasmic binding protein precursor GltI (TC 3.A.1.3.4), at 42,170 to 43,093
_928
Ac3H11_929 - L-serine ammonia-lyase (EC 4.3.1.17)
(from data)
, at 43,184 to 44,584
_929
Ac3H11_930 - hypothetical protein, at 44,593 to 45,345
_930
Ac3H11_931 - Phytoene synthase (EC 2.5.1.32), at 45,667 to 46,611
_931
Ac3H11_932 - Probable Co/Zn/Cd efflux system membrane fusion protein, at 46,745 to 47,980
_932
Group
Condition
Ac3H11
_928
Ac3H11
_929
Ac3H11
_930
Ac3H11
_931
Ac3H11
_932
nitrogen source
L-Serine (N)
-0.1
-3.7
-0.8
N.D.
-0.2
nitrogen source
L-Alanine (N)
-0.1
+0.3
-0.2
N.D.
-1.0
motility
inner cut, R2A soft agar motility assay
+0.3
-0.4
-0.2
N.D.
-0.3
stress
nitrite 10 mM
+0.0
-0.6
-0.1
N.D.
+0.1
nitrogen source
Ammonium chloride (N)
-0.2
+0.2
+0.7
N.D.
-1.2
stress
Cobalt chloride 0.4 mM
-0.1
-0.2
-0.3
N.D.
+0.2
nitrogen source
L-Isoleucine (N)
-0.1
+0.3
-0.2
N.D.
-0.4
stress
Paraquat dichloride 0.01 mg/ml
+0.1
-0.4
-0.5
N.D.
+0.5
pH
LB, pH10
+0.1
-0.5
-0.1
N.D.
+0.3
nitrogen source
L-tyrosine (N)
-0.1
-0.3
+0.3
N.D.
-0.2
stress
nitrate 100 mM
+0.0
-0.5
+0.2
N.D.
+0.0
nitrogen source
L-Threonine (N)
-0.1
+0.2
-0.0
N.D.
-0.3
stress
perchlorate 10 mM
+0.1
-0.4
-0.3
N.D.
+0.2
stress
Cisplatin 0.005 mg/ml
-0.2
-0.4
-0.2
N.D.
+0.7
stress
Phosphomycin 0.06 mg/ml
+0.1
-0.3
+0.2
N.D.
+0.3
stress
perchlorate 25 mM
+0.1
-0.3
-0.0
N.D.
+0.6
lb
LB
+0.2
-0.4
+0.4
N.D.
+0.3
stress
Nickel (II) chloride 0.6 mM
+0.2
-0.3
+0.2
N.D.
+0.4
lb
LB
+0.2
-0.2
+0.3
N.D.
+0.2
lb
LB
+0.4
-0.1
+0.1
N.D.
+0.1
stress
Phosphomycin 0.02 mg/ml
+0.2
-0.2
+0.2
N.D.
+0.4
stress
copper (II) chloride 2 mM
+0.2
-0.3
+0.4
N.D.
+0.4
stress
Bacitracin 0.008 mg/ml
+0.2
-0.1
+0.3
N.D.
+0.4
stress
Cisplatin 0.0025 mg/ml
+0.2
-0.2
+0.3
N.D.
+0.5
stress
Cobalt chloride 0.16 mM
+0.4
-0.0
+0.3
N.D.
+0.1
phage
phage 93.2
+0.2
+0.3
+0.2
N.D.
+0.1
stress
Sisomicin 0.0005 mg/ml
+0.3
-0.0
+0.3
N.D.
+0.3
stress
Sisomicin 0.001 mg/ml
+0.1
-0.1
+0.2
N.D.
+0.8
stress
Polymyxin B sulfate 0.0001 mg/ml
+0.4
+0.2
+0.5
N.D.
-0.2
motility
inner cut, R2A soft agar motility assay
+0.2
+0.4
-0.0
N.D.
+0.4
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