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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_918 and Ac3H11_919 are separated by 299 nucleotides
Ac3H11_919 and Ac3H11_920 are separated by 131 nucleotides
Ac3H11_920 and Ac3H11_921 are separated by 128 nucleotides
Ac3H11_921 and Ac3H11_922 are separated by 321 nucleotides
Ac3H11_918 - hypothetical protein, at 31,296 to 32,165
_918
Ac3H11_919 - Transcriptional regulator, LysR family, at 32,465 to 33,412
_919
Ac3H11_920 - FMN-dependent NADH-azoreductase, at 33,544 to 34,188
_920
Ac3H11_921 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 34,317 to 36,647
_921
Ac3H11_922 - Mobile element protein, at 36,969 to 37,949
_922
Group
Condition
Ac3H11
_918
Ac3H11
_919
Ac3H11
_920
Ac3H11
_921
Ac3H11
_922
pH
LB, pH10
-0.5
-1.4
+0.2
-0.0
+0.2
nitrogen source
L-Leucine (N)
-0.1
-0.5
-0.4
+0.1
-0.0
stress
syringaldehyde 2.5 mM
-0.7
-0.1
+0.1
+0.0
+0.0
stress
Cobalt chloride 0.32 mM
-0.1
-1.1
+0.1
+0.3
+0.1
pH
LB, pH10
+0.2
-1.1
+0.2
+0.1
+0.1
stress
Cobalt chloride 0.4 mM
-0.0
-0.6
+0.1
+0.2
+0.1
stress
Cisplatin 0.0025 mg/ml
-0.2
-0.2
-0.4
+0.3
+0.3
nitrogen source
Ammonium chloride (N)
+0.7
-0.3
-0.6
+0.1
+0.1
lb
LB
+0.1
-0.4
-0.1
+0.3
+0.1
stress
D-Cycloserine 0.05 mg/ml
+0.2
-0.5
+0.2
+0.1
-0.1
stress
Cobalt chloride 0.16 mM
+0.2
-0.4
-0.0
+0.3
-0.1
nitrogen source
L-Isoleucine (N)
+0.7
-0.4
-0.1
-0.2
+0.0
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.4
-0.0
+0.1
+0.4
+0.0
stress
Fusidic 0.001 mg/ml
+0.1
-0.4
+0.3
-0.1
+0.1
stress
Sisomicin 0.0005 mg/ml
+0.2
-0.3
-0.1
+0.3
+0.1
motility
inner cut, R2A soft agar motility assay
-0.4
+0.0
+0.5
-0.0
+0.1
nitrogen source
L-Threonine (N)
+0.2
+0.2
-0.1
-0.3
+0.1
stress
Nickel (II) chloride 0.6 mM
-0.0
-0.2
+0.1
+0.7
-0.2
nitrogen source
L-Alanine (N)
+1.2
-0.1
-0.8
-0.3
+0.3
motility
inner cut, R2A soft agar motility assay
+0.3
-0.3
+0.0
+0.2
+0.2
stress
Phosphomycin 0.02 mg/ml
-0.6
+0.1
+0.3
+0.2
+0.3
carbon source
D-Galactose (C)
-0.3
+0.2
+0.2
+0.2
+0.0
nitrogen source
L-tyrosine (N)
+0.1
+0.7
-0.1
-0.1
+0.0
stress
Aluminum chloride 4 mM
+0.4
+0.1
-0.3
+0.2
+0.1
carbon source
a-Ketoglutaric (C)
+0.3
-0.0
+0.5
-0.0
+0.0
carbon source
L-Lactate (C)
+0.3
+0.1
+0.1
+0.3
+0.1
stress
Chlorite 0.1 mM
-0.5
+0.6
+0.5
+0.4
-0.1
stress
Phosphomycin 0.06 mg/ml
+0.3
-0.0
+0.3
+0.2
+0.2
phage
phage 93.1
+0.4
+0.3
+0.1
+0.1
+0.2
lb
LB
+0.6
+0.4
+0.3
+0.2
-0.1
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