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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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500 nt
Ac3H11_862 and Ac3H11_863 are separated by 92 nucleotides
Ac3H11_863 and Ac3H11_864 are separated by 374 nucleotides
Ac3H11_864 and Ac3H11_865 overlap by 1 nucleotides
Ac3H11_865 and Ac3H11_866 are separated by 6 nucleotides
Ac3H11_862 - Universal stress family protein, at 144,576 to 145,055
_862
Ac3H11_863 - FIG00537372: hypothetical protein, at 145,148 to 145,537
_863
Ac3H11_864 - Phospholipase A1 precursor (EC 3.1.1.32, EC 3.1.1.4); Outer membrane phospholipase A, at 145,912 to 147,126
_864
Ac3H11_865 - hypothetical protein, at 147,126 to 147,677
_865
Ac3H11_866 - ATP-dependent DNA helicase Rep, at 147,684 to 149,663
_866
Group
Condition
Ac3H11
_862
Ac3H11
_863
Ac3H11
_864
Ac3H11
_865
Ac3H11
_866
pH
LB, pH10
-0.4
-0.1
-0.4
-1.6
N.D.
nitrogen source
D-Alanine (N)
-1.5
+0.3
-0.2
-0.9
N.D.
stress
Cisplatin 0.0025 mg/ml
-0.8
-0.5
-0.2
-0.7
N.D.
stress
Chlorite 0.1 mM
-0.4
-0.9
-0.1
-0.8
N.D.
stress
nitrite 10 mM
-0.0
+0.1
-0.2
-1.9
N.D.
stress
D-Cycloserine 0.05 mg/ml
-0.9
-0.2
+0.3
-1.1
N.D.
carbon source
succinate (C)
-0.6
+0.1
-0.0
-1.2
N.D.
stress
Nickel (II) chloride 0.6 mM
-0.0
+0.1
-0.1
-1.6
N.D.
lb
LB
+0.3
-0.4
-0.2
-1.3
N.D.
stress
sodium fluoride 35 mM
-0.1
+0.1
-0.5
-1.1
N.D.
stress
Sisomicin 0.001 mg/ml
+0.1
-0.4
-0.2
-1.0
N.D.
stress
copper (II) chloride 2 mM
+0.4
-0.1
-0.1
-1.7
N.D.
carbon source
casaminos (C)
-0.0
-0.2
-0.0
-1.2
N.D.
stress
Phosphomycin 0.06 mg/ml
-0.1
-0.3
-0.2
-0.8
N.D.
stress
syringaldehyde 2.5 mM
-0.6
-0.0
-0.1
-0.5
N.D.
stress
Sisomicin 0.004 mg/ml
-0.6
-0.1
+0.1
-0.6
N.D.
carbon source
succinate (C)
-0.5
-0.3
+0.0
-0.5
N.D.
stress
Cobalt chloride 0.16 mM
-0.0
-0.6
-0.3
-0.3
N.D.
stress
Cobalt chloride 0.32 mM
+0.7
-0.2
-0.1
-0.6
N.D.
stress
perchlorate 25 mM
-0.4
-0.1
-0.2
+0.6
N.D.
stress
Zinc 1 mM
+0.2
-0.4
-0.2
+0.4
N.D.
pH
LB, pH10
-0.8
+0.3
-0.3
+1.0
N.D.
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.2
-0.5
+0.2
+0.8
N.D.
stress
A22 0.025 mg/ml
+0.8
-0.2
-0.1
-0.1
N.D.
carbon source
a-Ketoglutaric (C)
+0.2
-0.4
-0.0
+0.6
N.D.
pH
LB, pH5
-0.2
-0.0
-0.1
+0.9
N.D.
nitrogen source
L-Leucine (N)
+0.2
-0.2
-0.2
+1.0
N.D.
nitrogen source
L-Histidine (N)
+0.4
+0.1
+0.0
+0.8
N.D.
phage
phage 93.1
+0.5
+0.1
+0.0
+0.7
N.D.
motility
inner cut, R2A soft agar motility assay
+0.0
+0.8
+0.1
+0.5
N.D.
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