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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_839 and Ac3H11_840 are separated by 9 nucleotides
Ac3H11_840 and Ac3H11_841 are separated by 17 nucleotides
Ac3H11_841 and Ac3H11_842 are separated by 181 nucleotides
Ac3H11_842 and Ac3H11_843 are separated by 163 nucleotides
Ac3H11_839 - transcriptional regulator, MerR family, at 121,513 to 121,707
_839
Ac3H11_840 - putative cinnamoyl-CoA reductase, at 121,717 to 122,745
_840
Ac3H11_841 - hypothetical protein, at 122,763 to 123,155
_841
Ac3H11_842 - Predicted transcriptional regulator, at 123,337 to 124,068
_842
Ac3H11_843 - FIG01198984: hypothetical protein, at 124,232 to 125,074
_843
Group
Condition
Ac3H11
_839
Ac3H11
_840
Ac3H11
_841
Ac3H11
_842
Ac3H11
_843
stress
Paraquat dichloride 0.01 mg/ml
-1.5
-0.4
-4.1
+0.1
+0.0
lb
LB
-0.6
-0.2
-4.2
+0.1
+0.1
nitrogen source
L-Alanine (N)
+0.3
-0.5
-4.0
-0.1
-0.3
motility
inner cut, R2A soft agar motility assay
+0.1
-0.2
-4.3
+0.1
-0.1
stress
D-Cycloserine 0.05 mg/ml
-1.0
+0.2
-2.6
-0.2
-0.2
carbon source
L-Lactate (C)
-0.2
-0.1
-2.8
-0.1
+0.2
stress
Cisplatin 0.005 mg/ml
+0.5
+0.7
-4.1
-0.2
+0.0
stress
Nickel (II) chloride 0.8 mM
-0.3
-0.3
-1.6
-0.1
-0.2
stress
A22 0.025 mg/ml
-1.0
-0.5
-1.0
-0.0
+0.0
pH
LB, pH10
-1.2
+0.2
-2.1
+0.5
+0.2
carbon source
a-Ketoglutaric (C)
+0.1
+0.1
-3.1
+0.6
+0.1
stress
nitrate 100 mM
-1.3
+0.1
-1.0
+0.1
-0.1
carbon source
Tween 20 (C)
-0.8
-0.0
-1.6
+0.1
+0.2
carbon source
D-Ribose (C)
+0.2
-0.1
-2.2
-0.0
+0.1
stress
nitrite 10 mM
-0.0
+0.0
-1.9
+0.1
-0.1
stress
Phosphomycin 0.06 mg/ml
+0.6
-0.2
-2.0
-0.0
+0.1
lb
LB
+0.3
-0.2
-1.3
-0.2
+0.2
stress
nitrite 10 mM
-0.4
+0.3
-0.8
-0.5
+0.2
stress
Chlorite 0.1 mM
-0.9
+0.1
-0.9
+0.5
+0.1
stress
sodium fluoride 25 mM
+0.4
+0.3
-2.2
+0.4
+0.0
carbon source
D-Glucose (C)
+0.3
+0.1
-1.4
-0.1
+0.2
carbon source
succinate (C)
+0.5
+0.4
-1.7
-0.1
+0.0
motility
inner cut, R2A soft agar motility assay
-1.5
+0.0
+0.7
+0.1
-0.2
carbon source
a-Ketoglutaric (C)
+1.4
-0.1
-1.7
-0.3
+0.0
stress
Sisomicin 0.001 mg/ml
-1.3
+0.0
+0.6
-0.0
+0.2
carbon source
D-Gluconic Acid (C)
+1.0
-0.0
-0.9
+0.2
-0.2
stress
Cisplatin 0.0025 mg/ml
-0.9
-0.2
+1.4
+0.4
+0.1
stress
Tetracycline 0.0001 mg/ml
+0.9
-0.2
+0.4
-0.5
+0.3
nitrogen source
Ammonium chloride (N)
+1.6
+0.4
-0.3
-0.1
+0.5
stress
2-Furfuraldehyde 0.06 vol%
+0.6
+0.2
+1.1
-0.0
+0.1
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