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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_836 and Ac3H11_837 overlap by 14 nucleotides
Ac3H11_837 and Ac3H11_838 overlap by 4 nucleotides
Ac3H11_838 and Ac3H11_839 are separated by 138 nucleotides
Ac3H11_839 and Ac3H11_840 are separated by 9 nucleotides
Ac3H11_836 - Ubiquinone biosynthesis monooxygenase UbiB, at 118,606 to 119,946
_836
Ac3H11_837 - conserved hypothetical protein, at 119,933 to 120,508
_837
Ac3H11_838 - transcriptional regulator, TetR family, at 120,505 to 121,374
_838
Ac3H11_839 - transcriptional regulator, MerR family, at 121,513 to 121,707
_839
Ac3H11_840 - putative cinnamoyl-CoA reductase, at 121,717 to 122,745
_840
Group
Condition
Ac3H11
_836
Ac3H11
_837
Ac3H11
_838
Ac3H11
_839
Ac3H11
_840
motility
inner cut, R2A soft agar motility assay
-0.0
+0.0
-0.2
-1.5
+0.0
stress
Cisplatin 0.0025 mg/ml
-0.2
-0.2
+0.0
-0.9
-0.2
stress
Chlorite 0.1 mM
-0.4
-0.1
-0.3
-0.9
+0.1
stress
Sisomicin 0.001 mg/ml
+0.3
-0.2
-0.2
-1.3
+0.0
stress
Paraquat dichloride 0.01 mg/ml
+0.5
-0.1
+0.1
-1.5
-0.4
stress
A22 0.025 mg/ml
+0.1
+0.1
-0.0
-1.0
-0.5
stress
nitrate 100 mM
-0.1
+0.3
-0.2
-1.3
+0.1
stress
D-Cycloserine 0.05 mg/ml
-0.2
-0.0
-0.2
-1.0
+0.2
pH
LB, pH9
-0.2
+0.0
-0.0
-1.0
-0.0
carbon source
propionate (C)
-0.3
-0.1
+0.0
-0.8
-0.1
carbon source
D-Galactose (C)
-0.2
-0.2
+0.2
-0.7
-0.1
pH
LB, pH10
-0.0
-0.2
-0.1
-0.8
+0.2
carbon source
D-Fructose (C)
+0.2
+0.0
+0.1
-0.9
-0.1
stress
nitrite 10 mM
-0.1
-0.1
-0.3
-0.4
+0.3
stress
copper (II) chloride 1 mM
+0.5
-0.2
-0.1
-0.6
+0.1
pH
LB, pH10
+0.9
-0.2
+0.2
-1.2
+0.2
stress
Fusidic 0.001 mg/ml
+0.1
-0.1
+0.3
-0.7
+0.2
stress
Phosphomycin 0.06 mg/ml
+0.2
-0.1
-0.1
+0.6
-0.2
stress
Tetracycline 0.0001 mg/ml
-0.2
+0.0
+0.1
+0.9
-0.2
carbon source
D-Gluconic Acid (C)
-0.1
+0.2
-0.2
+0.7
+0.3
stress
2-Furfuraldehyde 0.06 vol%
-0.1
+0.1
+0.2
+0.6
+0.2
nitrogen source
L-Leucine (N)
+0.6
-0.0
+0.1
+0.3
+0.1
stress
copper (II) chloride 2 mM
+0.1
-0.3
-0.0
+1.1
+0.3
stress
Nickel (II) chloride 0.6 mM
+0.2
+0.1
-0.0
+0.8
+0.2
carbon source
D-Gluconic Acid (C)
+0.3
-0.0
+0.0
+1.0
-0.0
carbon source
a-Ketoglutaric (C)
-0.0
+0.2
-0.1
+1.4
-0.1
nitrogen source
L-Isoleucine (N)
+0.7
+0.1
+0.0
+0.6
+0.2
nitrogen source
D-Alanine (N)
+0.6
+0.1
+0.4
+0.2
+0.4
stress
Cisplatin 0.005 mg/ml
+0.2
+0.2
+0.2
+0.5
+0.7
nitrogen source
Ammonium chloride (N)
+0.8
+0.2
+0.3
+1.6
+0.4
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