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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_832 and Ac3H11_833 are separated by 498 nucleotides
Ac3H11_833 and Ac3H11_834 are separated by 54 nucleotides
Ac3H11_834 and Ac3H11_835 are separated by 159 nucleotides
Ac3H11_835 and Ac3H11_836 are separated by 44 nucleotides
Ac3H11_832 - D-amino acid dehydrogenase small subunit (EC 1.4.99.1), at 114,974 to 116,218
_832
Ac3H11_833 - 2-keto-4-pentenoate hydratase (EC 4.2.1.80), at 116,717 to 117,511
_833
Ac3H11_834 - putative signal peptide protein, at 117,566 to 118,021
_834
Ac3H11_835 - hypothetical protein, at 118,181 to 118,561
_835
Ac3H11_836 - Ubiquinone biosynthesis monooxygenase UbiB, at 118,606 to 119,946
_836
Group
Condition
Ac3H11
_832
Ac3H11
_833
Ac3H11
_834
Ac3H11
_835
Ac3H11
_836
stress
nitrate 100 mM
-0.2
-0.2
-0.5
N.D.
-0.1
carbon source
D-Lactate (C)
-0.1
-0.4
-0.4
N.D.
-0.0
motility
inner cut, R2A soft agar motility assay
-0.0
-0.5
-0.3
N.D.
-0.1
stress
Cobalt chloride 0.16 mM
-0.2
-0.2
-0.3
N.D.
-0.3
stress
Chlorate 20 mM
-0.1
-0.3
-0.4
N.D.
-0.0
carbon source
a-Ketoglutaric (C)
-0.2
-0.4
-0.2
N.D.
-0.0
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.1
-0.1
-0.6
N.D.
-0.1
carbon source
D-Glucose (C)
-0.0
-0.5
+0.1
N.D.
-0.2
stress
nitrate 45 mM
+0.1
-0.2
-0.4
N.D.
-0.2
stress
Sisomicin 0.001 mg/ml
+0.0
-0.1
-0.7
N.D.
+0.3
stress
Cisplatin 0.0025 mg/ml
-0.4
+0.5
-0.3
N.D.
-0.2
stress
Fusidic 0.001 mg/ml
+0.1
-0.4
-0.2
N.D.
+0.1
stress
Cobalt chloride 0.32 mM
-0.1
+0.3
-0.3
N.D.
-0.3
stress
Bacitracin 0.032 mg/ml
-0.1
+0.5
-0.2
N.D.
-0.4
carbon source
succinate (C)
+0.1
+0.1
-0.5
N.D.
+0.2
stress
Tetracycline 0.0001 mg/ml
+0.0
-0.2
+0.3
N.D.
-0.2
nitrogen source
L-Isoleucine (N)
-0.1
-0.0
-0.4
N.D.
+0.7
stress
Zinc 1 mM
+0.2
-0.5
+0.3
N.D.
+0.2
nitrogen source
Ammonium chloride (N)
+0.1
-0.5
-0.3
N.D.
+0.8
stress
Cobalt chloride 0.32 mM
-0.0
+0.2
-0.3
N.D.
+0.3
stress
Cisplatin 0.005 mg/ml
+0.2
-0.5
+0.4
N.D.
+0.2
stress
Sisomicin 0.004 mg/ml
+0.2
-0.2
+0.1
N.D.
+0.3
stress
Phosphomycin 0.06 mg/ml
-0.2
+0.3
+0.1
N.D.
+0.2
stress
copper (II) chloride 1 mM
-0.1
-0.2
+0.2
N.D.
+0.5
nitrogen source
L-Alanine (N)
+0.5
-0.1
-0.0
N.D.
+0.3
nitrogen source
L-Leucine (N)
-0.0
-0.1
+0.1
N.D.
+0.6
stress
D-Cycloserine 0.05 mg/ml
-0.0
+0.3
+0.5
N.D.
-0.2
pH
LB, pH10
-0.2
+0.5
-0.3
N.D.
+0.9
nitrogen source
D-Alanine (N)
-0.2
+0.1
+0.4
N.D.
+0.6
carbon source
D-Galactose (C)
-0.1
+0.7
+0.1
N.D.
+0.2
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