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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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500 nt
Ac3H11_774 and Ac3H11_775 are separated by 104 nucleotides
Ac3H11_775 and Ac3H11_776 are separated by 197 nucleotides
Ac3H11_776 and Ac3H11_777 are separated by 79 nucleotides
Ac3H11_777 and Ac3H11_778 overlap by 4 nucleotides
Ac3H11_774 - Transcriptional regulator, LysR family, at 62,423 to 63,334
_774
Ac3H11_775 - Putative exported protein clustered with Gamma-glutamyltranspeptidase, at 63,439 to 64,473
_775
Ac3H11_776 - Gamma-glutamyltranspeptidase (EC 2.3.2.2), at 64,671 to 66,227
_776
Ac3H11_777 - Permeases of the drug/metabolite transporter (DMT) superfamily, at 66,307 to 67,194
_777
Ac3H11_778 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-), at 67,191 to 68,360
_778
Group
Condition
Ac3H11
_774
Ac3H11
_775
Ac3H11
_776
Ac3H11
_777
Ac3H11
_778
nitrogen source
Ammonium chloride (N)
-2.7
+0.5
+0.1
-0.5
-0.0
stress
Sisomicin 0.0005 mg/ml
-0.4
-0.1
-0.2
-0.0
-1.0
stress
Chlorate 20 mM
+0.4
-0.2
-0.5
-0.3
-0.9
lb
LB
-0.7
+0.1
-0.2
-0.1
-0.4
stress
copper (II) chloride 2 mM
-1.0
+0.0
-0.4
+0.3
-0.2
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.7
-0.2
-0.4
+0.2
-0.2
stress
Phosphomycin 0.02 mg/ml
-0.1
-0.1
-0.3
+0.2
-0.7
carbon source
D-Glucose (C)
+0.1
-0.1
-0.2
+0.3
-0.9
nitrogen source
L-Histidine (N)
-0.9
-0.1
+0.2
+0.2
-0.2
stress
Nickel (II) chloride 0.6 mM
+0.4
+0.0
-0.0
+0.0
-1.0
carbon source
D,L-Lactate (C)
+0.6
-0.1
-0.2
-0.1
-0.5
nitrogen source
L-Isoleucine (N)
-0.5
-0.1
+0.4
+0.3
-0.4
motility
inner cut, R2A soft agar motility assay
+0.4
+0.2
-0.1
-0.2
-0.6
stress
nitrite 10 mM
+0.2
+0.3
-0.1
-0.1
-0.6
lb
LB
+0.5
+0.0
-0.3
+0.2
-0.5
carbon source
pyruvate (C)
+0.7
-0.2
-0.1
-0.1
-0.2
motility
inner cut, R2A soft agar motility assay
-0.2
+0.4
+0.1
+0.4
-0.6
stress
Tetracycline 0.0001 mg/ml
+0.5
+0.0
-0.1
+0.6
-1.0
stress
Chlorite 0.1 mM
+0.2
+0.1
-0.2
+0.4
-0.5
stress
perchlorate 10 mM
+0.5
+0.2
+0.0
-0.2
-0.5
stress
Doxycycline hyclate 0.000025 mg/ml
+0.2
-0.1
+0.2
+0.6
-0.7
stress
sodium fluoride 20 mM
-0.1
+0.1
-0.4
-0.2
+0.8
stress
5-Hydroxymethylfurfural 5 mM
+0.4
+0.2
+0.2
-0.2
-0.4
stress
Cisplatin 0.0025 mg/ml
+0.9
-0.4
-0.4
-0.2
+0.4
pH
LB, pH10
+0.5
-0.4
-0.0
-0.7
+0.9
stress
sodium fluoride 35 mM
-0.1
+0.1
-0.3
-0.0
+0.9
stress
Phosphomycin 0.06 mg/ml
+0.9
-0.1
+0.0
-0.2
+0.3
stress
Paraquat dichloride 0.01 mg/ml
+0.6
+0.1
+0.2
+0.5
-0.3
stress
D-Cycloserine 0.05 mg/ml
+0.5
+0.1
+0.4
+0.2
+1.3
nitrogen source
D-Alanine (N)
+1.0
-0.1
+1.0
+0.2
+0.4
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