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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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500 nt
Ac3H11_721 and Ac3H11_722 are separated by 218 nucleotides
Ac3H11_722 and Ac3H11_723 are separated by 15 nucleotides
Ac3H11_723 and Ac3H11_724 are separated by 79 nucleotides
Ac3H11_724 and Ac3H11_725 are separated by 133 nucleotides
Ac3H11_721 - Phosphate starvation-inducible protein PsiF, at 11,148 to 11,489
_721
Ac3H11_722 - Arginyl-tRNA synthetase (EC 6.1.1.19), at 11,708 to 13,429
_722
Ac3H11_723 - Cell division protein FtsN, at 13,445 to 14,107
_723
Ac3H11_724 - Periplasmic thiol:disulfide interchange protein DsbA, at 14,187 to 14,834
_724
Ac3H11_725 - LptA, protein essential for LPS transport across the periplasm, at 14,968 to 15,624
_725
Group
Condition
Ac3H11
_721
Ac3H11
_722
Ac3H11
_723
Ac3H11
_724
Ac3H11
_725
pH
LB, pH5
N.D.
N.D.
-2.2
N.D.
N.D.
pH
LB, pH5
N.D.
N.D.
-1.7
N.D.
N.D.
nitrogen source
L-Leucine (N)
N.D.
N.D.
-1.4
N.D.
N.D.
stress
Bacitracin 0.032 mg/ml
N.D.
N.D.
-1.3
N.D.
N.D.
motility
inner cut, R2A soft agar motility assay
N.D.
N.D.
-1.1
N.D.
N.D.
stress
Cobalt chloride 0.32 mM
N.D.
N.D.
-0.9
N.D.
N.D.
stress
sodium fluoride 25 mM
N.D.
N.D.
-0.9
N.D.
N.D.
stress
D-Cycloserine 0.05 mg/ml
N.D.
N.D.
-0.9
N.D.
N.D.
carbon source
D,L-Lactate (C)
N.D.
N.D.
-0.9
N.D.
N.D.
carbon source
D-Ribose (C)
N.D.
N.D.
-0.9
N.D.
N.D.
stress
copper (II) chloride 2 mM
N.D.
N.D.
-0.8
N.D.
N.D.
motility
inner cut, R2A soft agar motility assay
N.D.
N.D.
-0.8
N.D.
N.D.
stress
Chloramphenicol 0.001 mg/ml
N.D.
N.D.
-0.8
N.D.
N.D.
stress
Aluminum chloride 4 mM
N.D.
N.D.
-0.8
N.D.
N.D.
nitrogen source
L-Alanine (N)
N.D.
N.D.
-0.8
N.D.
N.D.
motility
inner cut, R2A soft agar motility assay
N.D.
N.D.
-0.8
N.D.
N.D.
stress
Cisplatin 0.0025 mg/ml
N.D.
N.D.
-0.7
N.D.
N.D.
carbon source
a-Ketoglutaric (C)
N.D.
N.D.
-0.7
N.D.
N.D.
carbon source
pyruvate (C)
N.D.
N.D.
-0.7
N.D.
N.D.
carbon source
L-Arabinose (C)
N.D.
N.D.
-0.7
N.D.
N.D.
carbon source
D-Fructose (C)
N.D.
N.D.
-0.6
N.D.
N.D.
carbon source
D-Gluconic Acid (C)
N.D.
N.D.
+0.6
N.D.
N.D.
stress
Chlorite 0.1 mM
N.D.
N.D.
+0.7
N.D.
N.D.
stress
Sisomicin 0.0005 mg/ml
N.D.
N.D.
+0.7
N.D.
N.D.
stress
copper (II) chloride 1 mM
N.D.
N.D.
+0.8
N.D.
N.D.
carbon source
D-Gluconic Acid (C)
N.D.
N.D.
+0.8
N.D.
N.D.
stress
Zinc 1 mM
N.D.
N.D.
+0.9
N.D.
N.D.
pH
LB, pH9
N.D.
N.D.
+1.1
N.D.
N.D.
pH
LB, pH10
N.D.
N.D.
+3.2
N.D.
N.D.
pH
LB, pH10
N.D.
N.D.
+3.4
N.D.
N.D.
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