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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_706 and Ac3H11_707 overlap by 26 nucleotides
Ac3H11_707 and Ac3H11_708 overlap by 12 nucleotides
Ac3H11_708 and Ac3H11_709 are separated by 341 nucleotides
Ac3H11_709 and Ac3H11_710 are separated by 142 nucleotides
Ac3H11_706 - Potassium uptake protein TrkH, at 64,729 to 66,195
_706
Ac3H11_707 - hypothetical protein, at 66,170 to 66,295
_707
Ac3H11_708 - Glutamate--cysteine ligase (EC 6.3.2.2), divergent, of Alpha- and Beta-proteobacteria type, at 66,284 to 67,579
_708
Ac3H11_709 - Kup system potassium uptake protein, at 67,921 to 69,789
_709
Ac3H11_710 - Benzoate transport protein, at 69,932 to 71,119
_710
Group
Condition
Ac3H11
_706
Ac3H11
_707
Ac3H11
_708
Ac3H11
_709
Ac3H11
_710
stress
5-Hydroxymethylfurfural 5 mM
-0.1
N.D.
-1.3
-0.1
-0.2
stress
Nickel (II) chloride 0.8 mM
-0.2
N.D.
-1.6
+0.1
+0.1
stress
Dimethyl Sulfoxide 6 vol%
+0.4
N.D.
-0.7
-0.7
+0.1
stress
Tetracycline 0.0001 mg/ml
+0.8
N.D.
-2.0
+0.4
+0.2
nitrogen source
D-Alanine (N)
+0.6
N.D.
-0.4
-0.5
-0.2
stress
Phosphomycin 0.06 mg/ml
+1.1
N.D.
-0.9
-0.1
-0.3
pH
LB, pH10
+0.9
N.D.
-1.1
+0.3
-0.2
pH
LB, pH10
+0.7
N.D.
-0.7
+0.4
-0.1
stress
nitrite 10 mM
+1.8
N.D.
-1.4
-0.0
+0.2
stress
D-Cycloserine 0.05 mg/ml
+0.5
N.D.
-0.4
+0.7
-0.2
stress
Chlorate 20 mM
+0.1
N.D.
+1.0
-0.3
+0.2
stress
Cisplatin 0.005 mg/ml
+2.0
N.D.
-0.8
+0.3
-0.1
stress
sodium fluoride 35 mM
-0.1
N.D.
+1.0
+0.7
-0.2
stress
Phosphomycin 0.02 mg/ml
+1.0
N.D.
+0.8
-0.1
+0.0
stress
copper (II) chloride 1 mM
+1.2
N.D.
+0.6
+0.0
-0.1
stress
sodium fluoride 20 mM
-0.2
N.D.
+1.2
+0.9
-0.1
stress
Cisplatin 0.0025 mg/ml
+1.7
N.D.
+0.1
+0.0
-0.1
lb
LB
+1.3
N.D.
+0.5
+0.1
-0.0
stress
Bacitracin 0.008 mg/ml
+1.2
N.D.
+0.6
+0.0
-0.0
stress
Bacitracin 0.016 mg/ml
+1.0
N.D.
+0.7
+0.2
+0.1
stress
perchlorate 25 mM
+1.8
N.D.
+0.3
+0.1
-0.0
stress
Nickel (II) chloride 0.6 mM
+2.0
N.D.
+0.9
-0.1
-0.2
stress
Bacitracin 0.032 mg/ml
+1.2
N.D.
+1.0
+0.0
+0.4
lb
LB
+1.9
N.D.
+1.1
-0.1
-0.3
stress
Sisomicin 0.001 mg/ml
+2.2
N.D.
+0.8
-0.2
-0.0
lb
LB
+2.1
N.D.
+0.6
+0.1
+0.0
stress
Paraquat dichloride 0.01 mg/ml
+2.5
N.D.
+0.7
+0.1
-0.5
stress
Chlorite 0.1 mM
+1.9
N.D.
+0.9
+0.1
-0.1
stress
perchlorate 10 mM
+2.0
N.D.
+0.9
+0.2
-0.0
stress
copper (II) chloride 2 mM
+3.8
N.D.
-1.0
+0.2
+0.1
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