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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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500 nt
Ac3H11_692 and Ac3H11_693 are separated by 2 nucleotides
Ac3H11_693 and Ac3H11_694 are separated by 173 nucleotides
Ac3H11_694 and Ac3H11_695 overlap by 4 nucleotides
Ac3H11_695 and Ac3H11_696 overlap by 4 nucleotides
Ac3H11_692 - transcriptional regulator, RpiR family, at 48,650 to 49,612
_692
Ac3H11_693 - D-serine deaminase (EC 4.3.1.18), at 49,615 to 50,901
_693
Ac3H11_694 - Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1), at 51,075 to 52,100
_694
Ac3H11_695 - Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1), at 52,097 to 53,164
_695
Ac3H11_696 - Dipeptide transport system permease protein DppC (TC 3.A.1.5.2), at 53,161 to 54,024
_696
Group
Condition
Ac3H11
_692
Ac3H11
_693
Ac3H11
_694
Ac3H11
_695
Ac3H11
_696
motility
inner cut, R2A soft agar motility assay
-0.7
+0.2
-0.3
-0.1
-0.7
pH
LB, pH10
-1.1
-0.2
+0.0
-0.4
+0.2
stress
Cisplatin 0.005 mg/ml
+0.1
-0.5
-0.1
-0.5
-0.5
stress
sodium fluoride 35 mM
-0.6
+0.0
-0.3
-0.1
-0.5
stress
Paraquat dichloride 0.01 mg/ml
+0.5
+0.0
-0.4
-0.8
-0.5
stress
D-Cycloserine 0.05 mg/ml
-0.5
-0.2
-0.4
+0.6
-0.7
nitrogen source
L-Alanine (N)
-0.3
-0.1
-0.8
-0.0
+0.3
nitrogen source
L-Isoleucine (N)
-0.4
+0.2
-0.2
-0.1
-0.2
stress
2-Furfuraldehyde 0.06 vol%
-0.1
+0.2
-0.2
-0.1
-0.7
stress
perchlorate 25 mM
-0.6
+0.2
-0.3
-0.1
+0.0
carbon source
D-Glucose (C)
-0.8
+0.0
-0.2
+0.0
+0.3
phage
phage 93.2
-0.1
+0.1
-0.7
-0.2
+0.3
stress
5-Hydroxymethylfurfural 5 mM
-0.2
+0.3
-0.2
+0.0
-0.5
motility
inner cut, R2A soft agar motility assay
-0.8
+0.0
+0.6
+0.1
-0.5
carbon source
a-Ketoglutaric (C)
-0.7
+0.1
+0.2
-0.0
-0.1
stress
Chlorite 0.1 mM
-0.7
+0.1
-0.0
-0.1
+0.2
stress
Cisplatin 0.0025 mg/ml
+0.2
-0.2
+0.3
-0.5
-0.2
stress
A22 0.025 mg/ml
-0.6
+0.1
+0.4
-0.0
-0.2
nitrogen source
D-Alanine (N)
-0.3
-0.3
+0.0
-0.2
+0.4
stress
Nickel (II) chloride 0.8 mM
+0.1
+0.2
-0.5
+0.2
-0.4
carbon source
pyruvate (C)
-0.5
-0.1
+0.4
-0.3
+0.5
nitrogen source
Ammonium chloride (N)
-0.5
+0.2
+0.5
-0.1
-0.0
stress
Bacitracin 0.032 mg/ml
-0.3
+0.1
+0.7
-0.1
-0.1
stress
Sisomicin 0.001 mg/ml
+0.3
+0.1
+0.3
+0.1
-0.3
pH
LB, pH10
+0.6
+0.0
-0.1
-0.2
+0.3
carbon source
D-Gluconic Acid (C)
+0.6
+0.2
-0.2
+0.0
+0.1
carbon source
D-Gluconic Acid (C)
+0.6
-0.2
+0.2
-0.1
+0.2
stress
copper (II) chloride 1 mM
+0.2
-0.3
+0.2
+0.1
+0.6
phage
phage 93.1
-0.0
+0.1
+0.3
-0.3
+0.8
stress
copper (II) chloride 2 mM
+0.1
-0.4
+0.4
-0.1
+1.3
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