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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_66 and Ac3H11_67 overlap by 4 nucleotides
Ac3H11_67 and Ac3H11_68 are separated by 115 nucleotides
Ac3H11_68 and Ac3H11_69 are separated by 16 nucleotides
Ac3H11_69 and Ac3H11_70 are separated by 93 nucleotides
Ac3H11_66 - Benzoate transport, ATPase component, at 68,938 to 69,708
_66
Ac3H11_67 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 69,705 to 70,448
_67
Ac3H11_68 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 70,564 to 71,550
_68
Ac3H11_69 - Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1), at 71,567 to 72,640
_69
Ac3H11_70 - D(-)-3-hydroxybutyrate oligomer hydrolase (EC 3.1.1.22), at 72,734 to 74,878
_70
Group
Condition
Ac3H11
_66
Ac3H11
_67
Ac3H11
_68
Ac3H11
_69
Ac3H11
_70
pH
LB, pH10
-0.3
-2.5
-1.1
+0.2
-0.7
stress
A22 0.025 mg/ml
-0.0
-0.7
-1.8
+0.1
+0.0
nitrogen source
D-Alanine (N)
+0.4
-1.1
-1.4
+0.2
+0.0
lb
LB
-0.0
-0.9
-1.0
+0.3
-0.2
carbon source
a-Ketoglutaric (C)
-0.5
-0.3
-0.8
+0.1
+0.2
carbon source
D-Gluconic Acid (C)
-0.3
-0.6
-0.8
-0.0
+0.6
stress
Bacitracin 0.032 mg/ml
+0.1
-0.7
-0.7
-0.0
+0.3
stress
Cobalt chloride 0.16 mM
-0.2
-0.6
-0.3
-0.1
+0.3
motility
inner cut, R2A soft agar motility assay
-0.6
-0.4
+0.2
+0.3
-0.3
stress
sodium fluoride 35 mM
+0.2
-0.7
+0.1
-0.6
+0.2
stress
sodium fluoride 20 mM
-0.0
-0.5
-0.6
+0.0
+0.3
stress
Paraquat dichloride 0.01 mg/ml
-0.3
+0.0
-0.8
+0.5
-0.2
temperature
LB 23C
+0.1
-0.3
-0.9
+0.3
+0.3
motility
inner cut, R2A soft agar motility assay
+0.1
+0.4
-0.8
+0.2
-0.2
stress
Nickel (II) chloride 0.8 mM
+0.1
-0.9
+0.5
-0.2
+0.1
lb
LB
-0.0
-0.5
-0.5
+0.4
+0.3
stress
Cisplatin 0.005 mg/ml
+0.1
-0.6
-0.0
+0.6
-0.2
carbon source
a-Ketoglutaric (C)
+0.7
-1.1
+0.3
-0.0
+0.1
stress
Cephalothin 0.025 mg/ml
-0.1
+0.7
-0.7
+0.1
+0.0
stress
Sisomicin 0.001 mg/ml
+0.3
-0.0
+0.7
-0.8
-0.1
pH
LB, pH10
-0.2
-0.1
+0.6
+0.4
-0.4
stress
Phosphomycin 0.02 mg/ml
-0.5
+0.4
+0.9
-0.1
-0.3
nitrogen source
Ammonium chloride (N)
+0.1
+0.5
+0.9
-0.4
-0.5
carbon source
D-Glucose (C)
+0.2
-0.4
+0.8
-0.1
+0.1
stress
nitrate 20 mM
+0.2
-0.5
+0.8
+0.1
+0.1
stress
Chlorite 0.1 mM
+0.7
-1.3
+1.1
+0.2
-0.0
stress
D-Cycloserine 0.05 mg/ml
+0.1
+0.4
+0.4
+0.5
-0.1
stress
copper (II) chloride 2 mM
+0.3
+0.3
+0.9
+0.2
-0.2
nitrogen source
L-Alanine (N)
+0.2
+0.1
+0.5
+0.8
-0.1
phage
phage 93.2
-0.0
+1.6
+1.9
-0.1
+0.2
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