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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_659 and Ac3H11_660 are separated by 62 nucleotides
Ac3H11_660 and Ac3H11_661 are separated by 62 nucleotides
Ac3H11_661 and Ac3H11_662 are separated by 34 nucleotides
Ac3H11_662 and Ac3H11_663 are separated by 96 nucleotides
Ac3H11_659 - FIG00348829: hypothetical protein, at 15,118 to 15,747
_659
Ac3H11_660 - hypothetical protein, at 15,810 to 16,349
_660
Ac3H11_661 - NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2), at 16,412 to 18,019
_661
Ac3H11_662 - NAD(P) transhydrogenase subunit beta (EC 1.6.1.2), at 18,054 to 19,466
_662
Ac3H11_663 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 19,563 to 21,242
_663
Group
Condition
Ac3H11
_659
Ac3H11
_660
Ac3H11
_661
Ac3H11
_662
Ac3H11
_663
carbon source
Tween 20 (C)
-0.2
-0.1
-0.9
-0.5
+0.1
stress
perchlorate 10 mM
-0.5
-0.3
-0.3
+0.0
-0.3
stress
copper (II) chloride 2 mM
-0.7
-0.4
-0.2
-0.1
+0.1
stress
perchlorate 25 mM
-0.3
-0.5
-0.3
-0.2
+0.1
pH
LB, pH5
-0.4
-0.5
+0.1
-0.0
-0.1
carbon source
D-Galactose (C)
-0.5
+0.1
-0.2
-0.2
-0.2
carbon source
succinate (C)
-0.7
-0.2
+0.1
-0.0
-0.0
pH
LB, pH10
-0.8
-0.6
-0.0
+0.0
+0.4
stress
Cisplatin 0.005 mg/ml
-0.7
-0.1
-0.1
+0.2
-0.1
stress
Fusidic 0.001 mg/ml
-0.5
-0.2
-0.1
+0.1
-0.1
stress
Sisomicin 0.001 mg/ml
-0.5
-0.5
-0.3
+0.2
+0.3
carbon source
succinate (C)
-0.3
-0.5
+0.1
-0.1
+0.1
stress
Paraquat dichloride 0.01 mg/ml
-0.4
-0.2
-0.3
+0.1
+0.2
stress
Chlorite 0.1 mM
-0.4
-0.3
+0.4
+0.1
-0.2
carbon source
D,L-Lactate (C)
-0.5
+0.4
-0.1
+0.0
-0.1
stress
Phosphomycin 0.06 mg/ml
-0.5
+0.3
-0.0
+0.2
-0.2
lb
LB
-0.6
+0.2
+0.1
+0.1
+0.0
nitrogen source
L-tyrosine (N)
-0.4
-0.6
+0.0
+0.1
+0.8
nitrogen source
L-Alanine (N)
+0.3
-0.9
+0.0
+0.3
+0.3
carbon source
pyruvate (C)
-0.3
-0.2
+0.2
+0.1
+0.4
lb
LB
-0.4
+0.3
+0.0
+0.1
+0.2
stress
Cisplatin 0.0025 mg/ml
-0.5
+0.1
+0.3
+0.4
+0.2
nitrogen source
Ammonium chloride (N)
+0.0
+0.1
+0.2
+0.9
-0.4
stress
Cobalt chloride 0.32 mM
-0.1
+0.6
-0.1
+0.0
+0.3
motility
inner cut, R2A soft agar motility assay
+0.0
+1.1
-0.2
+0.3
-0.2
carbon source
a-Ketoglutaric (C)
-0.1
+0.2
+0.2
+0.3
+0.4
carbon source
D-Gluconic Acid (C)
+0.3
-0.0
+0.1
+0.1
+0.6
carbon source
D-Glucose (C)
-0.1
+0.6
+0.2
+0.3
+0.1
stress
2-Furfuraldehyde 0.06 vol%
+0.3
+0.7
+0.1
+0.1
+0.0
stress
D-Cycloserine 0.05 mg/ml
+0.6
+0.4
+0.3
+0.3
-0.1
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