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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_621 and Ac3H11_622 are separated by 665 nucleotides
Ac3H11_622 and Ac3H11_623 are separated by 97 nucleotides
Ac3H11_623 and Ac3H11_624 are separated by 110 nucleotides
Ac3H11_624 and Ac3H11_625 are separated by 176 nucleotides
Ac3H11_621 - Thioredoxin reductase (EC 1.8.1.9), at 60,051 to 60,944
_621
Ac3H11_622 - Transcriptional regulator, LysR family, at 61,610 to 62,554
_622
Ac3H11_623 - Permeases of the major facilitator superfamily, at 62,652 to 63,863
_623
Ac3H11_624 - Uncharacterized protein conserved in bacteria, at 63,974 to 64,573
_624
Ac3H11_625 - hypothetical protein, at 64,750 to 64,881
_625
Group
Condition
Ac3H11
_621
Ac3H11
_622
Ac3H11
_623
Ac3H11
_624
Ac3H11
_625
stress
Cisplatin 0.005 mg/ml
+0.1
-0.4
-0.5
N.D.
N.D.
lb
LB
-0.4
-0.1
-0.3
N.D.
N.D.
stress
Bacitracin 0.016 mg/ml
+0.2
-0.2
-0.5
N.D.
N.D.
carbon source
D-Ribose (C)
-0.4
+0.2
-0.1
N.D.
N.D.
carbon source
D-Gluconic Acid (C)
-0.7
+0.1
+0.2
N.D.
N.D.
stress
Bacitracin 0.008 mg/ml
-0.8
-0.0
+0.5
N.D.
N.D.
carbon source
pyruvate (C)
-0.2
+0.2
-0.2
N.D.
N.D.
stress
nitrite 10 mM
+0.3
-0.5
-0.0
N.D.
N.D.
stress
Sisomicin 0.004 mg/ml
+0.3
+0.0
-0.5
N.D.
N.D.
stress
syringaldehyde 2.5 mM
+0.2
+0.1
-0.4
N.D.
N.D.
stress
D-Cycloserine 0.05 mg/ml
+0.4
-0.1
-0.3
N.D.
N.D.
carbon source
a-Ketoglutaric (C)
-0.4
+0.1
+0.3
N.D.
N.D.
carbon source
D-Glucose (C)
-0.3
+0.0
+0.3
N.D.
N.D.
lb
LB
-0.1
-0.3
+0.4
N.D.
N.D.
stress
2-Furfuraldehyde 0.06 vol%
+0.2
+0.2
-0.3
N.D.
N.D.
motility
inner cut, R2A soft agar motility assay
+0.3
+0.2
-0.5
N.D.
N.D.
stress
Nickel (II) chloride 0.8 mM
+0.3
+0.1
-0.3
N.D.
N.D.
stress
Doxycycline hyclate 0.000025 mg/ml
+0.2
+0.3
-0.3
N.D.
N.D.
stress
copper (II) chloride 1 mM
-0.2
+0.1
+0.3
N.D.
N.D.
motility
inner cut, R2A soft agar motility assay
+0.3
+0.3
-0.4
N.D.
N.D.
nitrogen source
L-tyrosine (N)
+0.3
+0.2
-0.2
N.D.
N.D.
carbon source
pyruvate (C)
-0.3
+0.3
+0.4
N.D.
N.D.
stress
Cobalt chloride 0.16 mM
+0.2
-0.1
+0.4
N.D.
N.D.
pH
LB, pH10
-0.1
+0.1
+0.6
N.D.
N.D.
nitrogen source
L-Phenylalanine (N)
+0.3
+0.2
+0.2
N.D.
N.D.
carbon source
L-Arabinose (C)
+0.2
+0.2
+0.4
N.D.
N.D.
nitrogen source
L-Isoleucine (N)
+0.2
+0.1
+0.5
N.D.
N.D.
carbon source
D-Galactose (C)
+0.5
+0.2
+0.3
N.D.
N.D.
nitrogen source
D-Alanine (N)
+0.7
+0.2
+0.6
N.D.
N.D.
nitrogen source
Uridine (N)
+0.3
+0.7
+0.6
N.D.
N.D.
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