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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_618 and Ac3H11_619 are separated by 267 nucleotides
Ac3H11_619 and Ac3H11_620 are separated by 293 nucleotides
Ac3H11_620 and Ac3H11_621 are separated by 152 nucleotides
Ac3H11_621 and Ac3H11_622 are separated by 665 nucleotides
Ac3H11_618 - hypothetical protein, at 57,920 to 58,501
_618
Ac3H11_619 - hypothetical protein, at 58,769 to 59,020
_619
Ac3H11_620 - Transcriptional regulator, TetR family, at 59,314 to 59,898
_620
Ac3H11_621 - Thioredoxin reductase (EC 1.8.1.9), at 60,051 to 60,944
_621
Ac3H11_622 - Transcriptional regulator, LysR family, at 61,610 to 62,554
_622
Group
Condition
Ac3H11
_618
Ac3H11
_619
Ac3H11
_620
Ac3H11
_621
Ac3H11
_622
stress
copper (II) chloride 1 mM
N.D.
-2.2
-0.1
-0.2
+0.1
stress
D-Cycloserine 0.05 mg/ml
N.D.
-1.9
-0.6
+0.4
-0.1
stress
Bacitracin 0.008 mg/ml
N.D.
-0.8
-0.3
-0.8
-0.0
stress
Aluminum chloride 2 mM
N.D.
-1.5
-0.3
-0.0
+0.1
stress
sodium fluoride 25 mM
N.D.
-1.5
+0.1
-0.1
-0.1
nitrogen source
Ammonium chloride (N)
N.D.
-1.5
-0.2
+0.2
+0.1
lb
LB
N.D.
-0.7
-0.3
-0.1
-0.3
stress
Bacitracin 0.016 mg/ml
N.D.
-1.1
-0.2
+0.2
-0.2
pH
LB, pH6
N.D.
-1.5
-0.0
+0.0
+0.4
pH
LB, pH10
N.D.
-1.8
+0.6
+0.3
-0.0
pH
LB, pH10
N.D.
-1.6
+0.8
-0.1
+0.1
stress
nitrite 10 mM
N.D.
-0.7
+0.1
+0.3
-0.5
nitrogen source
L-tyrosine (N)
N.D.
-1.3
+0.1
+0.3
+0.2
carbon source
D-Mannose (C)
N.D.
-1.1
+0.3
+0.2
+0.0
motility
inner cut, R2A soft agar motility assay
N.D.
-1.1
+0.4
+0.3
+0.2
stress
Cisplatin 0.005 mg/ml
N.D.
+0.7
-0.5
+0.1
-0.4
carbon source
L-Malic (C)
N.D.
+0.7
-0.4
+0.4
+0.1
nitrogen source
Uridine (N)
N.D.
-0.6
+0.3
+0.3
+0.7
carbon source
D-Gluconic Acid (C)
N.D.
+0.9
+0.0
-0.2
+0.3
stress
Sisomicin 0.004 mg/ml
N.D.
+0.9
-0.1
+0.3
+0.0
stress
sodium fluoride 20 mM
N.D.
+1.0
-0.1
+0.2
+0.0
stress
perchlorate 10 mM
N.D.
+1.6
+0.0
-0.1
-0.3
motility
inner cut, R2A soft agar motility assay
N.D.
-0.1
+0.7
+0.3
+0.3
stress
Doxycycline hyclate 0.000025 mg/ml
N.D.
+1.2
-0.4
+0.2
+0.3
carbon source
D-Galactose (C)
N.D.
+0.8
+0.4
+0.1
+0.2
nitrogen source
L-Glutamine (N)
N.D.
+1.1
+0.2
+0.1
+0.1
lb
LB
N.D.
+1.1
+0.1
+0.4
+0.0
carbon source
succinate (C)
N.D.
+1.4
+0.0
+0.2
+0.1
stress
Cephalothin 0.005 mg/ml
N.D.
+1.6
+0.0
-0.0
+0.1
temperature
LB 30C
N.D.
+2.9
+0.2
-0.1
+0.0
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