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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_539 and Ac3H11_540 are separated by 136 nucleotides
Ac3H11_540 and Ac3H11_541 are separated by 400 nucleotides
Ac3H11_541 and Ac3H11_542 are separated by 67 nucleotides
Ac3H11_542 and Ac3H11_543 overlap by 4 nucleotides
Ac3H11_539 - Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3), at 240,792 to 244,799
_539
Ac3H11_540 - Membrane protein, putative, at 244,936 to 245,922
_540
Ac3H11_541 - Outer membrane protein W precursor, at 246,323 to 246,913
_541
Ac3H11_542 - Lysine exporter protein (LYSE/YGGA), at 246,981 to 247,625
_542
Ac3H11_543 - hypothetical protein, at 247,622 to 247,807
_543
Group
Condition
Ac3H11
_539
Ac3H11
_540
Ac3H11
_541
Ac3H11
_542
Ac3H11
_543
motility
inner cut, R2A soft agar motility assay
N.D.
-0.1
+0.0
+0.1
-3.9
stress
Cisplatin 0.0025 mg/ml
N.D.
-2.6
-0.2
+0.4
-0.4
motility
inner cut, R2A soft agar motility assay
N.D.
-0.3
-0.7
+0.1
-1.0
pH
LB, pH10
N.D.
-0.3
+0.1
-1.2
-0.3
stress
Cobalt chloride 0.32 mM
N.D.
-0.6
+0.2
-0.4
-0.6
stress
sodium fluoride 25 mM
N.D.
-0.7
+0.1
+0.6
-0.4
phage
phage 93.1
N.D.
+0.3
-0.2
+0.8
-0.9
stress
nitrate 100 mM
N.D.
-0.3
+0.5
-0.7
+0.6
stress
Paraquat dichloride 0.01 mg/ml
N.D.
-1.5
+0.2
+1.1
+0.4
stress
D-Cycloserine 0.05 mg/ml
N.D.
+0.8
-0.1
+0.4
-0.9
lb
LB
N.D.
-0.9
+0.5
+0.5
+0.2
nitrogen source
L-Alanine (N)
N.D.
+0.4
+0.0
-1.1
+1.0
stress
Polymyxin B sulfate 0.0001 mg/ml
N.D.
+0.6
+0.1
-0.8
+0.6
lb
LB
N.D.
+0.8
+0.1
+0.2
-0.7
stress
Nickel (II) chloride 0.6 mM
N.D.
-0.9
-0.2
+0.8
+0.7
carbon source
succinate (C)
N.D.
-0.1
+0.0
-0.7
+1.4
carbon source
D-Fructose (C)
N.D.
+0.5
+0.1
-0.5
+0.6
stress
Phosphomycin 0.02 mg/ml
N.D.
+0.6
-0.4
+0.3
+0.4
pH
LB, pH10
N.D.
+0.7
-0.3
+0.9
-0.3
stress
Cisplatin 0.005 mg/ml
N.D.
-0.4
+0.3
+0.8
+0.3
stress
perchlorate 10 mM
N.D.
+0.3
-0.1
+0.4
+0.7
carbon source
L-Asparagine (C)
N.D.
-0.1
+0.3
+0.9
+0.4
stress
Sisomicin 0.001 mg/ml
N.D.
+0.6
+0.4
+0.7
-0.1
stress
Chlorite 0.1 mM
N.D.
+0.4
+0.2
+1.0
+0.2
phage
phage 93.1
N.D.
+1.1
+0.1
+0.6
+0.1
nitrogen source
D-Alanine (N)
N.D.
+0.8
+0.2
+0.6
+0.3
lb
LB
N.D.
+0.9
+0.4
+0.8
-0.1
stress
Bacitracin 0.008 mg/ml
N.D.
+0.2
+0.1
+0.7
+1.0
nitrogen source
Ammonium chloride (N)
N.D.
+1.0
+0.1
+0.0
+1.1
stress
copper (II) chloride 2 mM
N.D.
+0.8
+0.2
+0.7
+0.7
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