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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_513 and Ac3H11_514 are separated by 255 nucleotides
Ac3H11_514 and Ac3H11_515 are separated by 378 nucleotides
Ac3H11_515 and Ac3H11_516 are separated by 72 nucleotides
Ac3H11_516 and Ac3H11_517 are separated by 41 nucleotides
Ac3H11_513 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 211,926 to 213,914
_513
Ac3H11_514 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 214,170 to 215,948
_514
Ac3H11_515 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 216,327 to 218,090
_515
Ac3H11_516 - COGs COG3146, at 218,163 to 219,503
_516
Ac3H11_517 - NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase, at 219,545 to 221,203
_517
Group
Condition
Ac3H11
_513
Ac3H11
_514
Ac3H11
_515
Ac3H11
_516
Ac3H11
_517
stress
Cisplatin 0.0025 mg/ml
+0.1
+0.1
-0.1
-0.2
-1.8
stress
Cisplatin 0.005 mg/ml
-1.1
+0.1
-0.0
-0.4
-0.4
pH
LB, pH10
-0.7
+0.3
-0.2
-0.0
-1.0
carbon source
L-Arabinose (C)
-0.0
-0.0
-0.1
+0.1
-1.6
stress
Paraquat dichloride 0.01 mg/ml
+0.1
-0.3
-0.0
-0.0
-1.0
pH
LB, pH10
+0.2
-0.3
-0.3
-0.0
-0.9
stress
Phosphomycin 0.06 mg/ml
-0.3
+0.1
+0.1
-0.1
-0.8
carbon source
L-Arabinose (C)
+0.1
+0.1
+0.1
-0.1
-1.1
lb
LB
+0.3
-0.1
+0.1
-0.1
-1.0
stress
Chlorite 0.1 mM
-0.1
+0.1
+0.3
-0.1
-1.0
carbon source
L-Arabinose (C)
+0.1
+0.2
+0.2
+0.1
-1.5
stress
Nickel (II) chloride 0.6 mM
+0.0
+0.1
+0.2
-0.2
-0.9
stress
A22 0.025 mg/ml
-0.1
+0.2
+0.0
+0.2
-0.9
carbon source
Glycerol (C)
+0.2
-0.1
+0.1
-0.2
-0.6
stress
Chlorate 20 mM
+0.2
+0.0
-0.2
+0.0
-0.7
carbon source
D-Galactose (C)
+0.1
+0.1
+0.1
+0.0
-0.9
carbon source
D-Galactose (C)
+0.2
-0.0
+0.1
+0.2
-1.0
lb
LB
+0.2
+0.1
+0.2
-0.1
-0.8
carbon source
D-Galactose (C)
+0.2
-0.0
+0.4
-0.0
-0.8
lb
LB
-0.1
+0.0
+0.3
+0.3
-0.8
stress
copper (II) chloride 2 mM
-0.2
+0.0
-0.2
-0.1
+0.7
carbon source
succinate (C)
-0.3
+0.2
-0.2
+0.0
+0.5
nitrogen source
D-Alanine (N)
+0.0
-0.2
+0.2
-0.2
+0.6
nitrogen source
Ammonium chloride (N)
+0.1
-0.1
-0.1
+0.2
+1.0
carbon source
Tween 20 (C)
+0.4
+0.2
+0.3
-0.1
+0.3
phage
phage 93.2
+0.3
+0.5
-0.1
+0.2
+0.3
motility
inner cut, R2A soft agar motility assay
+0.9
+0.3
-0.2
+0.3
+0.1
nitrogen source
L-Alanine (N)
+0.6
+0.4
+0.1
+0.2
+0.2
nitrogen source
L-Isoleucine (N)
+0.5
+0.3
+0.4
+0.0
+0.7
stress
D-Cycloserine 0.05 mg/ml
+0.2
+0.2
-0.5
+0.3
+4.5
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