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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_503 and Ac3H11_504 are separated by 66 nucleotides
Ac3H11_504 and Ac3H11_505 are separated by 125 nucleotides
Ac3H11_505 and Ac3H11_506 are separated by 184 nucleotides
Ac3H11_506 and Ac3H11_507 are separated by 87 nucleotides
Ac3H11_503 - Outer membrane protein assembly factor YaeT precursor, at 198,630 to 200,024
_503
Ac3H11_504 - FIG00348850: hypothetical protein, at 200,091 to 200,912
_504
Ac3H11_505 - Transcriptional regulator, TetR family, at 201,038 to 201,643
_505
Ac3H11_506 - biphenyl-2,3-diol 1,2-dioxygenase III-related protein, at 201,828 to 202,214
_506
Ac3H11_507 - Thymidine phosphorylase (EC 2.4.2.4), at 202,302 to 204,578
_507
Group
Condition
Ac3H11
_503
Ac3H11
_504
Ac3H11
_505
Ac3H11
_506
Ac3H11
_507
carbon source
Tween 20 (C)
-0.4
-0.1
-4.1
+0.0
+0.1
carbon source
propionate (C)
+0.1
-0.3
-2.8
+0.0
+0.1
carbon source
D-Gluconic Acid (C)
-0.0
-0.5
-2.0
+0.0
-0.1
carbon source
pyruvate (C)
-0.1
-0.1
-2.4
-0.0
+0.0
carbon source
a-Ketoglutaric (C)
+0.0
-0.4
-2.2
-0.1
+0.2
pH
LB, pH10
+0.1
-0.5
-1.6
-0.2
+0.0
carbon source
D-Gluconic Acid (C)
-0.1
-0.0
-2.3
+0.0
+0.2
stress
copper (II) chloride 2 mM
+0.2
-1.2
-1.7
+0.1
+0.6
stress
Cobalt chloride 0.32 mM
+0.0
-0.4
-1.4
-0.2
+0.0
stress
Chlorite 0.1 mM
-0.0
-1.7
-0.2
-0.0
+0.2
pH
LB, pH10
+0.1
-0.4
-1.5
+0.1
+0.0
pH
LB, pH5
+0.0
-0.3
-1.6
+0.1
+0.1
stress
nitrate 100 mM
-0.1
-0.9
-0.6
-0.2
+0.2
stress
Polymyxin B sulfate 0.0001 mg/ml
+0.1
-0.5
-1.2
-0.1
+0.1
carbon source
D-Glucose (C)
-0.0
-0.0
-1.6
+0.0
+0.1
carbon source
D-Glucose (C)
-0.0
-0.3
-1.4
+0.0
+0.2
stress
A22 0.025 mg/ml
+0.2
+0.1
-1.2
-0.1
-0.3
stress
Cobalt chloride 0.4 mM
-0.0
+0.4
-1.9
+0.4
-0.0
carbon source
a-Ketoglutaric (C)
+0.1
+0.1
-1.6
+0.2
+0.1
stress
Cisplatin 0.005 mg/ml
-0.2
+0.4
-0.8
-0.0
-0.5
stress
Cobalt chloride 0.32 mM
-0.1
+0.4
-1.0
-0.2
-0.0
stress
syringaldehyde 2.5 mM
+0.2
-0.2
-1.2
+0.1
+0.1
stress
D-Cycloserine 0.05 mg/ml
+0.4
-0.7
-0.8
+0.2
-0.1
nitrogen source
L-Threonine (N)
-1.3
+0.4
+0.1
+0.2
+0.1
nitrogen source
Uridine (N)
-0.8
+0.5
+0.5
+0.9
+0.1
nitrogen source
L-Glutamine (N)
-0.6
+0.4
+0.6
+0.6
+0.2
nitrogen source
L-Leucine (N)
-1.5
+0.9
+1.8
+1.3
+0.2
nitrogen source
D-Alanine (N)
-0.6
+0.7
+1.9
+1.4
+0.0
nitrogen source
L-Isoleucine (N)
-0.9
+1.4
+2.0
+1.6
+0.2
nitrogen source
Ammonium chloride (N)
-0.7
+1.8
+2.0
+1.9
+0.0
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