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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_4998 and Ac3H11_4999 are separated by 167 nucleotides
Ac3H11_4999 and Ac3H11_5000 are separated by 143 nucleotides
Ac3H11_5000 and Ac3H11_5001 are separated by 412 nucleotides
Ac3H11_5001 and Ac3H11_5002 are separated by 13 nucleotides
Ac3H11_4998 - 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54), at 167,810 to 168,910
_4998
Ac3H11_4999 - NLP/P60 protein, at 169,078 to 169,581
_4999
Ac3H11_5000 - 2-isopropylmalate synthase (EC 2.3.3.13), at 169,725 to 171,425
_5000
Ac3H11_5001 - PhnB protein, at 171,838 to 172,203
_5001
Ac3H11_5002 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 172,217 to 174,142
_5002
Group
Condition
Ac3H11
_4998
Ac3H11
_4999
Ac3H11
_5000
Ac3H11
_5001
Ac3H11
_5002
nitrogen source
Ammonium chloride (N)
-0.5
-0.3
-0.2
-0.5
-0.1
nitrogen source
L-Isoleucine (N)
-0.2
+0.1
-1.3
-0.0
-0.0
stress
Fusidic 0.001 mg/ml
-0.1
-0.7
-0.1
-0.3
-0.0
stress
Cisplatin 0.005 mg/ml
+0.1
-0.6
-0.1
-0.2
-0.3
nitrogen source
L-Threonine (N)
-0.1
-0.2
-0.8
+0.4
-0.2
stress
copper (II) chloride 1 mM
+0.1
-0.7
+0.0
-0.3
-0.1
stress
Sisomicin 0.001 mg/ml
-0.2
-0.0
-0.0
-0.6
+0.0
stress
copper (II) chloride 2 mM
-0.0
+0.1
-0.2
-0.7
+0.1
nitrogen source
Uridine (N)
-0.1
-0.1
-0.2
-0.4
+0.0
stress
D-Cycloserine 0.05 mg/ml
-0.2
+0.2
-0.3
-0.1
-0.2
carbon source
succinate (C)
-0.2
-0.1
+0.0
-0.4
+0.1
carbon source
L-Arabinose (C)
+0.1
+0.1
-0.7
-0.1
-0.1
carbon source
L-Arabinose (C)
+0.0
+0.1
-0.7
-0.2
+0.2
stress
Nickel (II) chloride 0.8 mM
-0.2
-0.5
-0.1
+0.1
+0.2
stress
Bacitracin 0.032 mg/ml
-0.2
-0.3
+0.0
+0.2
-0.1
lb
LB
+0.1
-0.3
-0.0
-0.3
+0.2
stress
nitrate 100 mM
-0.2
-0.1
-0.1
-0.1
+0.2
carbon source
Tween 20 (C)
-0.1
+0.1
-0.1
-0.2
+0.1
stress
Cisplatin 0.0025 mg/ml
+0.1
+0.3
-0.2
-0.3
-0.1
stress
Bacitracin 0.008 mg/ml
+0.0
-0.4
+0.2
-0.1
+0.1
pH
LB, pH10
-0.0
+0.4
-0.4
-0.3
+0.1
lb
LB
+0.2
-0.3
+0.1
+0.0
-0.1
stress
2-Furfuraldehyde 0.06 vol%
+0.1
-0.4
-0.0
+0.2
-0.0
carbon source
D-Ribose (C)
+0.1
+0.1
-0.1
-0.3
+0.1
motility
inner cut, R2A soft agar motility assay
+0.1
-0.2
+0.4
-0.5
+0.3
stress
Cobalt chloride 0.32 mM
-0.1
+0.1
-0.3
+0.1
+0.4
motility
inner cut, R2A soft agar motility assay
+0.2
-0.3
+0.4
+0.1
-0.1
motility
inner cut, R2A soft agar motility assay
-0.0
+0.2
-0.2
+0.4
+0.0
stress
copper (II) chloride 1 mM
+0.3
+0.2
+0.0
-0.2
+0.2
stress
Polymyxin B sulfate 0.0001 mg/ml
+0.2
+0.6
-0.1
+0.0
+0.1
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