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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_4990 and Ac3H11_4991 are separated by 16 nucleotides
Ac3H11_4991 and Ac3H11_4992 are separated by 78 nucleotides
Ac3H11_4992 and Ac3H11_4993 overlap by 13 nucleotides
Ac3H11_4993 and Ac3H11_4994 are separated by 997 nucleotides
Ac3H11_4990 - Pirin, at 154,855 to 155,604
_4990
Ac3H11_4991 - Cation transport protein chaC, at 155,621 to 156,364
_4991
Ac3H11_4992 - hypothetical protein, at 156,443 to 158,449
_4992
Ac3H11_4993 - Mobile element protein, at 158,437 to 158,610
_4993
Ac3H11_4994 - DNA recombination-dependent growth factor C, at 159,608 to 160,726
_4994
Group
Condition
Ac3H11
_4990
Ac3H11
_4991
Ac3H11
_4992
Ac3H11
_4993
Ac3H11
_4994
stress
Paraquat dichloride 0.01 mg/ml
-0.5
+0.1
-0.2
-1.0
N.D.
nitrogen source
L-Alanine (N)
+0.0
-0.9
+0.1
-0.7
N.D.
carbon source
L-Lactate (C)
-0.1
-0.5
-0.3
-0.7
N.D.
pH
LB, pH10
-0.0
-0.5
-0.1
-0.8
N.D.
nitrogen source
D-Alanine (N)
-0.2
-0.2
+0.0
-1.0
N.D.
lb
LB
-0.1
+0.1
-0.1
-1.1
N.D.
carbon source
pyruvate (C)
-0.1
-0.3
-0.5
-0.3
N.D.
stress
Nickel (II) chloride 0.6 mM
+0.1
-0.3
-0.1
-0.9
N.D.
motility
inner cut, R2A soft agar motility assay
+0.1
-0.3
-0.1
-0.7
N.D.
carbon source
pyruvate (C)
-0.0
-0.2
-0.4
-0.4
N.D.
carbon source
succinate (C)
-0.2
-0.4
-0.3
-0.1
N.D.
nitrogen source
L-Phenylalanine (N)
-0.0
-0.2
-0.0
-0.7
N.D.
carbon source
D-Lactate (C)
-0.2
-0.3
-0.2
-0.2
N.D.
stress
Bacitracin 0.016 mg/ml
-0.1
+0.1
-0.2
-0.8
N.D.
carbon source
D-Gluconic Acid (C)
-0.1
-0.6
-0.4
+0.2
N.D.
stress
Cobalt chloride 0.4 mM
-0.1
+0.1
-0.0
-0.8
N.D.
nitrogen source
L-Isoleucine (N)
-0.2
-0.6
-0.1
+0.2
N.D.
stress
Phosphomycin 0.02 mg/ml
-0.0
+0.2
-0.1
-0.6
N.D.
stress
copper (II) chloride 1 mM
-0.1
+0.3
-0.1
-0.6
N.D.
carbon source
pyruvate (C)
-0.2
+0.0
-0.5
+0.3
N.D.
carbon source
succinate (C)
+0.2
-0.5
-0.4
+0.3
N.D.
stress
perchlorate 25 mM
-0.1
-0.5
+0.0
+0.4
N.D.
stress
copper (II) chloride 2 mM
-0.2
-0.1
-0.2
+0.4
N.D.
lb
LB
-0.3
-0.1
-0.1
+0.4
N.D.
nitrogen source
Ammonium chloride (N)
+0.2
-0.5
+0.1
+0.2
N.D.
motility
inner cut, R2A soft agar motility assay
-0.1
-0.4
+0.1
+0.7
N.D.
stress
syringaldehyde 2.5 mM
-0.2
+0.3
-0.2
+0.4
N.D.
stress
Cobalt chloride 0.32 mM
-0.2
+0.0
+0.1
+0.8
N.D.
stress
Cisplatin 0.005 mg/ml
-0.1
+0.3
+0.3
+0.2
N.D.
phage
phage 93.1
+0.2
+0.7
-0.0
+0.2
N.D.
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