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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_4983 and Ac3H11_4984 overlap by 4 nucleotides
Ac3H11_4984 and Ac3H11_4985 are separated by 10 nucleotides
Ac3H11_4985 and Ac3H11_4986 are separated by 17 nucleotides
Ac3H11_4986 and Ac3H11_4987 are separated by 13 nucleotides
Ac3H11_4983 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 147,127 to 147,969
_4983
Ac3H11_4984 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 147,966 to 148,856
_4984
Ac3H11_4985 - Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1), at 148,867 to 149,904
_4985
Ac3H11_4986 - High-affinity leucine-specific transport system, periplasmic binding protein LivK (TC 3.A.1.4.1), at 149,922 to 151,103
_4986
Ac3H11_4987 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 151,117 to 151,935
_4987
Group
Condition
Ac3H11
_4983
Ac3H11
_4984
Ac3H11
_4985
Ac3H11
_4986
Ac3H11
_4987
motility
inner cut, R2A soft agar motility assay
-2.3
+0.1
-0.5
-0.0
+0.0
carbon source
D-Ribose (C)
-1.2
+0.0
-0.1
-0.1
-0.1
stress
nitrite 10 mM
-0.9
+0.1
-0.3
-0.0
-0.0
carbon source
succinate (C)
-1.2
+0.1
+0.2
-0.1
+0.0
stress
copper (II) chloride 1 mM
-0.9
-0.2
-0.1
+0.1
+0.0
nitrogen source
D-Alanine (N)
-0.5
+0.2
-0.4
-0.1
-0.2
stress
Cobalt chloride 0.32 mM
-1.1
+0.2
-0.0
+0.1
+0.1
motility
inner cut, R2A soft agar motility assay
-0.6
-0.1
+0.3
-0.2
-0.1
nitrogen source
L-Leucine (N)
-1.0
+0.7
-0.1
-0.2
-0.1
stress
Cobalt chloride 0.4 mM
-0.7
-0.0
+0.3
-0.1
-0.1
nitrogen source
L-Isoleucine (N)
+0.2
+0.3
-0.6
-0.2
+0.1
stress
Cephalothin 0.025 mg/ml
-0.7
+0.4
-0.0
-0.1
+0.1
nitrogen source
L-Alanine (N)
-0.7
+0.6
+0.1
-0.4
+0.2
stress
Aluminum chloride 2 mM
+0.8
-0.1
-0.2
-0.1
+0.2
carbon source
L-Lactate (C)
+0.8
-0.3
-0.1
+0.2
+0.1
stress
Aluminum chloride 4 mM
+0.9
-0.1
-0.2
+0.1
-0.1
carbon source
pyruvate (C)
+0.8
-0.2
-0.1
+0.1
+0.2
pH
LB, pH10
+0.9
+0.2
-0.2
-0.2
+0.1
stress
Phosphomycin 0.06 mg/ml
+0.7
-0.2
+0.1
+0.1
+0.2
stress
Cisplatin 0.0025 mg/ml
+1.1
-0.1
-0.2
+0.2
+0.1
stress
Cobalt chloride 0.32 mM
+1.1
+0.1
-0.1
+0.1
-0.0
stress
nitrite 10 mM
+1.1
+0.1
-0.2
+0.1
+0.0
stress
Phosphomycin 0.02 mg/ml
+1.2
-0.0
+0.2
-0.1
-0.1
stress
perchlorate 10 mM
+0.9
+0.3
-0.1
+0.1
-0.0
stress
Bacitracin 0.008 mg/ml
+0.8
+0.5
+0.1
-0.0
-0.1
stress
perchlorate 25 mM
+0.9
+0.5
+0.1
+0.0
-0.2
motility
inner cut, R2A soft agar motility assay
+0.9
+0.3
+0.3
-0.0
+0.0
pH
LB, pH10
+1.5
-0.5
+0.1
+0.2
+0.2
carbon source
succinate (C)
+1.0
+0.4
-0.1
+0.1
+0.3
stress
Paraquat dichloride 0.01 mg/ml
+0.6
+0.4
+0.1
+0.6
+0.0
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