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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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500 nt
Ac3H11_4981 and Ac3H11_4982 are separated by 351 nucleotides
Ac3H11_4982 and Ac3H11_4983 are separated by 156 nucleotides
Ac3H11_4983 and Ac3H11_4984 overlap by 4 nucleotides
Ac3H11_4984 and Ac3H11_4985 are separated by 10 nucleotides
Ac3H11_4981 - ATP-dependent DNA helicase, at 144,106 to 145,761
_4981
Ac3H11_4982 - Transcriptional regulator, TetR family, at 146,113 to 146,970
_4982
Ac3H11_4983 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 147,127 to 147,969
_4983
Ac3H11_4984 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 147,966 to 148,856
_4984
Ac3H11_4985 - Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1), at 148,867 to 149,904
_4985
Group
Condition
Ac3H11
_4981
Ac3H11
_4982
Ac3H11
_4983
Ac3H11
_4984
Ac3H11
_4985
motility
inner cut, R2A soft agar motility assay
-0.1
+0.0
-2.3
+0.1
-0.5
carbon source
D-Ribose (C)
+0.1
-0.5
-1.2
+0.0
-0.1
stress
Cobalt chloride 0.32 mM
-0.0
-0.4
-1.1
+0.2
-0.0
carbon source
D-Glucose (C)
-0.1
-1.3
+0.1
+0.3
-0.0
carbon source
D-Glucose (C)
-0.3
-0.9
-0.1
+0.1
+0.1
carbon source
succinate (C)
-0.1
+0.1
-1.2
+0.1
+0.2
nitrogen source
D-Alanine (N)
+0.1
-0.4
-0.5
+0.2
-0.4
nitrogen source
L-Leucine (N)
-0.0
-0.2
-1.0
+0.7
-0.1
nitrogen source
Ammonium chloride (N)
-0.3
-0.8
+0.9
-0.0
+0.1
lb
LB
-0.0
-0.5
+0.4
-0.3
+0.3
carbon source
D-Mannose (C)
-0.2
-0.4
+0.5
+0.2
-0.3
pH
LB, pH10
-0.3
-0.5
+0.9
+0.2
-0.2
carbon source
L-Lactate (C)
-0.1
-0.2
+0.8
-0.3
-0.1
carbon source
D-Gluconic Acid (C)
-0.0
+1.0
-0.5
-0.3
-0.1
nitrogen source
L-Isoleucine (N)
+0.3
+0.1
+0.2
+0.3
-0.6
stress
Paraquat dichloride 0.01 mg/ml
-0.0
-0.8
+0.6
+0.4
+0.1
nitrogen source
L-Alanine (N)
+0.3
+0.1
-0.7
+0.6
+0.1
stress
Cobalt chloride 0.32 mM
-0.3
-0.3
+1.1
+0.1
-0.1
nitrogen source
L-Arginine (N)
-0.1
-0.4
+0.7
+0.3
-0.0
stress
Aluminum chloride 4 mM
-0.1
+0.2
+0.9
-0.1
-0.2
stress
nitrite 10 mM
+0.1
-0.3
+1.1
+0.1
-0.2
carbon source
D-Gluconic Acid (C)
-0.1
+1.1
-0.4
+0.1
+0.1
pH
LB, pH10
-0.1
-0.1
+1.5
-0.5
+0.1
stress
Cisplatin 0.0025 mg/ml
-0.0
+0.2
+1.1
-0.1
-0.2
stress
perchlorate 10 mM
+0.1
-0.3
+0.9
+0.3
-0.1
stress
perchlorate 25 mM
-0.2
-0.3
+0.9
+0.5
+0.1
stress
Bacitracin 0.008 mg/ml
-0.1
-0.2
+0.8
+0.5
+0.1
stress
Phosphomycin 0.02 mg/ml
-0.1
-0.1
+1.2
-0.0
+0.2
carbon source
succinate (C)
+0.1
-0.0
+1.0
+0.4
-0.1
motility
inner cut, R2A soft agar motility assay
+0.2
+0.0
+0.9
+0.3
+0.3
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