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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_4919 and Ac3H11_4920 are separated by 70 nucleotides
Ac3H11_4920 and Ac3H11_4921 overlap by 18 nucleotides
Ac3H11_4921 and Ac3H11_4922 overlap by 4 nucleotides
Ac3H11_4922 and Ac3H11_4923 overlap by 4 nucleotides
Ac3H11_4919 - hypothetical protein, at 82,098 to 82,628
_4919
Ac3H11_4920 - hypothetical protein, at 82,699 to 82,917
_4920
Ac3H11_4921 - mRNA 3-end processing factor, at 82,900 to 83,868
_4921
Ac3H11_4922 - ATP-dependent DNA ligase (EC 6.5.1.1) LigC, at 83,865 to 85,676
_4922
Ac3H11_4923 - FIG003033: Helicase domain protein, at 85,673 to 88,465
_4923
Group
Condition
Ac3H11
_4919
Ac3H11
_4920
Ac3H11
_4921
Ac3H11
_4922
Ac3H11
_4923
stress
Cisplatin 0.005 mg/ml
+0.6
-0.3
-1.2
-1.5
+0.3
stress
Cisplatin 0.0025 mg/ml
-0.0
-0.2
-0.7
-1.0
+0.1
motility
inner cut, R2A soft agar motility assay
-0.8
+0.0
-0.4
-0.2
+0.1
carbon source
D-Fructose (C)
-0.2
-0.2
-0.1
-0.1
-0.3
nitrogen source
L-tyrosine (N)
-0.1
-0.5
-0.2
+0.1
-0.2
stress
D-Cycloserine 0.05 mg/ml
+0.2
-0.7
-0.5
+0.2
-0.0
pH
LB, pH5
-0.1
-0.3
-0.2
+0.1
-0.2
nitrogen source
L-Isoleucine (N)
-0.5
+0.0
-0.3
-0.1
+0.3
carbon source
succinate (C)
-0.3
+0.2
-0.1
-0.0
-0.2
stress
copper (II) chloride 2 mM
-0.0
-0.4
-0.2
+0.4
+0.0
lb
LB
-0.3
-0.3
+0.1
+0.0
+0.3
phage
phage 93.2
+0.1
+0.3
-0.1
+0.0
-0.5
carbon source
a-Ketoglutaric (C)
-0.0
-0.2
-0.1
+0.5
-0.1
carbon source
D-Gluconic Acid (C)
-0.3
-0.1
-0.2
+0.4
+0.1
stress
syringaldehyde 2.5 mM
-0.3
-0.3
+0.2
+0.2
+0.2
stress
Sisomicin 0.001 mg/ml
+0.1
+0.0
-0.1
-0.4
+0.5
nitrogen source
L-Threonine (N)
-0.4
+0.1
+0.0
+0.4
+0.1
stress
perchlorate 10 mM
+0.5
-0.6
+0.1
-0.0
+0.3
lb
LB
-0.1
-0.2
+0.6
+0.1
+0.0
carbon source
L-Arabinose (C)
+0.5
-0.2
+0.2
-0.0
+0.0
stress
Zinc 1 mM
+0.2
-0.3
+0.4
+0.2
-0.1
nitrogen source
D-Alanine (N)
+0.3
+0.5
-0.0
-0.4
+0.1
carbon source
D-Galactose (C)
+0.4
-0.3
+0.2
+0.1
+0.2
pH
LB, pH10
-0.5
+0.3
+0.0
+0.4
+0.3
carbon source
succinate (C)
+0.2
-0.2
+0.3
+0.1
+0.3
nitrogen source
L-Alanine (N)
-0.2
+0.3
-0.1
+0.4
+0.2
stress
Thallium(I) acetate 0.0006 mg/ml
+0.3
-0.2
+0.3
+0.2
+0.1
lb
LB
+0.5
+0.3
-0.1
+0.4
+0.1
stress
Cobalt chloride 0.4 mM
+0.9
+0.0
-0.2
+0.3
+0.1
motility
inner cut, R2A soft agar motility assay
+0.2
+0.4
+0.1
+1.2
+0.4
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