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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_4897 and Ac3H11_4898 are separated by 176 nucleotides
Ac3H11_4898 and Ac3H11_4899 are separated by 140 nucleotides
Ac3H11_4899 and Ac3H11_4900 overlap by 17 nucleotides
Ac3H11_4900 and Ac3H11_4901 are separated by 6 nucleotides
Ac3H11_4897 - ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17), at 63,794 to 64,429
_4897
Ac3H11_4898 - Calcium-binding EF-hand-containing protein, at 64,606 to 64,935
_4898
Ac3H11_4899 - ABC transporter ATP-binding protein, at 65,076 to 65,870
_4899
Ac3H11_4900 - Putative amino acid ABC transporter, permease protein, at 65,854 to 66,507
_4900
Ac3H11_4901 - amino acid ABC transporter, permease protein, at 66,514 to 67,188
_4901
Group
Condition
Ac3H11
_4897
Ac3H11
_4898
Ac3H11
_4899
Ac3H11
_4900
Ac3H11
_4901
nitrogen source
L-Isoleucine (N)
-1.1
-1.0
+0.3
-0.3
-0.1
motility
inner cut, R2A soft agar motility assay
-0.7
+0.1
-0.7
-0.7
-0.1
stress
D-Cycloserine 0.05 mg/ml
-1.4
-0.4
-0.1
+0.2
-0.2
stress
Cobalt chloride 0.4 mM
+0.1
-0.8
-1.0
+0.0
-0.2
nitrogen source
Ammonium chloride (N)
+0.6
-0.9
-0.6
-0.6
-0.4
motility
inner cut, R2A soft agar motility assay
+0.1
-0.8
-0.5
-0.3
+0.0
lb
LB
-0.7
-0.1
-0.6
+0.0
+0.1
pH
LB, pH10
+0.4
+0.4
-1.4
-0.2
-0.5
lb
LB
-0.1
+0.5
-1.3
-0.2
+0.2
pH
LB, pH10
-0.2
-0.4
-0.3
-0.3
+0.4
stress
perchlorate 10 mM
+0.7
-0.4
-0.5
-0.5
-0.1
nitrogen source
L-Phenylalanine (N)
+0.2
-0.7
-0.4
-0.1
+0.2
nitrogen source
L-Alanine (N)
+0.8
-0.5
-0.5
-0.0
-0.3
stress
Cobalt chloride 0.32 mM
+0.6
-0.2
-0.5
-0.2
-0.2
lb
LB
-0.3
+0.5
-0.8
-0.0
+0.2
lb
LB
+0.4
+0.2
-0.5
-0.0
-0.4
carbon source
succinate (C)
+0.6
+0.5
-1.0
+0.0
+0.0
phage
phage 93.1
+0.4
-0.2
+0.6
-0.2
-0.1
stress
nitrate 100 mM
+0.8
-0.3
+0.2
+0.1
-0.4
stress
Chlorite 0.1 mM
+1.3
+0.2
-1.0
+0.1
-0.2
carbon source
D-Gluconic Acid (C)
+0.5
+0.2
-0.6
+0.0
+0.4
stress
Nickel (II) chloride 0.6 mM
+1.0
-0.4
+0.3
+0.1
-0.1
stress
copper (II) chloride 2 mM
-0.4
+0.6
+0.7
-0.0
-0.2
carbon source
succinate (C)
+1.0
+0.3
+0.1
+0.1
-0.1
carbon source
a-Ketoglutaric (C)
+0.5
+0.1
+0.3
+0.1
+0.5
stress
Paraquat dichloride 0.01 mg/ml
+0.3
+0.4
+1.2
-0.2
-0.1
carbon source
D-Galactose (C)
+0.9
+0.3
+0.4
-0.2
+0.2
stress
Sisomicin 0.001 mg/ml
+0.4
+0.2
+1.0
-0.1
+0.2
stress
Cisplatin 0.0025 mg/ml
-0.5
+0.7
+0.5
+0.5
+0.6
carbon source
D-Lactate (C)
+0.9
-0.1
+0.8
+0.0
+0.3
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